Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2168 ATGGCGAAAGATATAAGCGAGAACGAACAGATTACGGAGACTGGCAAGAAGCTGACACTACCAATGGAGATGCAACAGCTTCTAAATATGGGGTTCCCACATGAGTTAGCAGCAGAAGCCCTAGCTGCTACTGGCGGCAAATCCACCATTGAAGCCACCGAATGGATCTTAAACCACAAAGCCACTTCTCCTTCTAAACATGCCTCTAACTCTAACCCTTCTCCAGTTCAGCCCAAACTTGATCGCTTTTTCCAGTTTCAATCCAAACCCTCTTCTAAAATCACAGCCACATCACAAACCATTCAACAAGAACAAGAAGAAGCAGATTTAGACTTAGAAGTATCAACCCCAAATGTTAACCCGTCGTCATCCAAACGTCTCAAACTATCACCATCTAACACCAAGCCCAGTTCTCCTGTCTTTCTGAATCATTTTCGTGGTCATAGGGGTGTTGAAAATGCTTCTAATGCCAAACCCCACGAACCCTTGTATGAGCGAATGCGTCCCAGAACTATTGATGATGTTATCGGTCAGGAACATCTGCTTGCTTCTAATTCGCTCCTTCGCTCCGCCATTGAACGGGGCCGTCTTCCTTCCATCGTCTTCTGGGGTCCTCCTGGTGCAGGTAAGACCTCTATTGCTAAAGCCATTGTTAATTCAGCAAGTTCTTCTCAGAAACAACAATGCTTCTCTTATCGCTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAAGGATGTGAGAGATGCGGTAGATGAGGCTAGGAAACTGAGAGTTAAGTGTAATCAAAGAACTGTTCTGTTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTTTTGCCGGTTATTGAAGATGGAAGTATTGTTTTCGTTGGTGCTACTACTGAAAACCCTTCTTTCCATTTGATTACGCCATTGCTGTCTCGGTGTCGTGTACTTACCCTGAACCCCTTGAAACCCCAGCATGTTGTGATGATTCTAAAGAGGTCTGTGGATAATTTGGACAAAGGATTGGTGCAAAGCATTGGTTTTCAAGTTGACGTAGCTGAAGATGTGATCACTTTCTTGGCCAACAATTGTGATGGTGATGCTCGGGTGGCATTGAATGCATTGGAGATTGCAGCTGTTACAGCAGCTGCTCGGTCACAAGATGATAAGAAATCTAAGGATGTCAAAGAAACTGAAGGCATGGATGGTCAAATAAACCAAGAAAATAGAGCTTGTCCATCTGTTCATATTGTTACCCTGGATGATGCAAAAGAGGCGCTTCAGTGCAAGCACCTTGCTTATGATAGAGCTGGAGAAGAGCACTATAATCTAATTAGTGCTCTACACAAATCAATGAGGGGAAGTGACGCTGATGCAGCAATTTATTGGTTGGCAAGAATGTTGGAAGGAGGTGAAGTGCCTCTTTACATTGCGCGGAGATTGATAAGGTTTGCGAGTGAGGACGTTGGGTTGGCTGATCCATCTGCTCTTACTCAGGCTGTTTCATGCTACCAAGCCTGCCACTTTTTGGGTATGCCTGAGTGCAATGTGATTCTTACACAGTGTGTTGCTTATTTGGCCTTAGCTCCTAAATCTATTGCTGTTTATCGAGCAATAGAAGCAGCTCAGAGGGTTGTCAGGGAATCAGTTGGACAGAATGAGGGAGTGCCTCTTCATCTTAGAAATGCACCAACTAAACTAATGAAGGAACTTGGCTATGGGAAGGGATACATATACACTCCTGATAATCCCACTTTGAACCAGAGCTATTTACCACCCTCCCTAAATGGGTACAAATTCCTTGATTGGCCTGACAGAAATACTTCTGATGAACAAAAATGTTAA 1845 0.439 MAKDISENEQITETGKKLTLPMEMQQLLNMGFPHELAAEALAATGGKSTIEATEWILNHKATSPSKHASNSNPSPVQPKLDRFFQFQSKPSSKITATSQTIQQEQEEADLDLEVSTPNVNPSSSKRLKLSPSNTKPSSPVFLNHFRGHRGVENASNAKPHEPLYERMRPRTIDDVIGQEHLLASNSLLRSAIERGRLPSIVFWGPPGAGKTSIAKAIVNSASSSQKQQCFSYRFVSLSAVTSGVKDVRDAVDEARKLRVKCNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPQHVVMILKRSVDNLDKGLVQSIGFQVDVAEDVITFLANNCDGDARVALNALEIAAVTAAARSQDDKKSKDVKETEGMDGQINQENRACPSVHIVTLDDAKEALQCKHLAYDRAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEVPLYIARRLIRFASEDVGLADPSALTQAVSCYQACHFLGMPECNVILTQCVAYLALAPKSIAVYRAIEAAQRVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYTPDNPTLNQSYLPPSLNGYKFLDWPDRNTSDEQKC 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2168 614 Gene3D - 532 613 - -
Prci8g2168 614 MobiDBLite consensus disorder prediction 115 139 - -
Prci8g2168 614 FunFam Putative AAA family ATPase 428 531 - -
Prci8g2168 614 Gene3D - 23 61 - -
Prci8g2168 614 SMART uba_6 20 58 IPR015940 -
Prci8g2168 614 MobiDBLite consensus disorder prediction 91 139 - -
Prci8g2168 614 FunFam AAA-type ATPase family protein 322 398 - -
Prci8g2168 614 Pfam UBA/TS-N domain 25 56 IPR015940 -
Prci8g2168 614 SUPERFAMILY UBA-like 24 60 IPR009060 GO:0005515
Prci8g2168 614 MobiDBLite consensus disorder prediction 91 105 - -
Prci8g2168 614 SUPERFAMILY post-AAA+ oligomerization domain-like 438 608 IPR008921 GO:0003677|GO:0006260
Prci8g2168 614 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 59 IPR015940 -
Prci8g2168 614 CDD AAA 176 315 - -
Prci8g2168 614 Gene3D - 428 531 - -
Prci8g2168 614 Gene3D - 322 397 - -
Prci8g2168 614 SMART AAA_5 196 322 IPR003593 GO:0016887
Prci8g2168 614 CDD HLD_clamp_RarA 322 386 - -
Prci8g2168 614 Gene3D - 151 320 IPR027417 -
Prci8g2168 614 Pfam MgsA AAA+ ATPase C terminal 454 607 IPR021886 -
Prci8g2168 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 394 IPR027417 -
Prci8g2168 614 FunFam Replication-associated recombination protein A 153 321 - -
Prci8g2168 614 Pfam ATPase family associated with various cellular activities (AAA) 200 316 IPR003959 GO:0005524|GO:0016887
Prci8g2168 614 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 22 612 - -
Prci8g2168 614 Pfam AAA C-terminal domain 349 453 IPR032423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2168 Prci-Chr8 25143915 25147902 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2168 160 376 Core DNA Replication Machinery Family AT1G63160 25.778 5.23e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2168 K07478 - qsu:112015639 785.793