Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2153 ATGTCGAATCCTAAGCCCCCGCGCGAGCCTCTGACAGCCAGTTTGGTCGATTCGCCCCTTCGGTATCACACTGCGAATACTGCGGAATCAGATGGACAGTCCTCAGTCAGAAGTACGAAGTACTACCCACCTGCGAACGCTCTCTATGAGGACCTCGCTAGCAGTTCGGACTTTTTCTGGAATAACCTTCAGGATTTCCACAAATCCTTAGGCACCACATTAAAAGTTCCAACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTAACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAGACACTGTAACCAGCGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTTCGCAAGCAAGCCCCTTCTTTTTCAATGCCTGATTCTGGTAGCAGGAGCATATTGAGCTCAAAGGAAGTTGATGCTTTGAATGATTTACCAGTTTGTCCGCTCCAGCAGCAGCTTGGCTCTTTGGTGCCTGGTACCATCGACTTGAAATTTGATGGTGGGTATGTAGTCACTGTAAATCTGGGTTCTGACCAGCTGAAAGGCGTGCTGTATCACGTTCCTCTCAATGCATCACAGACTTCTGCATCCATACCTGCTTCTGTGAATCGAAAGAGATCAAGGTTGGGTTCACATGATCCTTCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGTTAAAGCCTTTATACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTTTATGGAACCATCTCACTGACGCAGAAAGACAGATATATCAGGAGAAGGGAAGAAGAGATAAGGAGAGATACAGGACTGAAATGGAGGAATACAAAGCATCCAATAATTTGAGTCCTCAGCAGTAG 972 0.4444 MSNPKPPREPLTASLVDSPLRYHTANTAESDGQSSVRSTKYYPPANALYEDLASSSDFFWNNLQDFHKSLGTTLKVPTIGGKPLDLYRLFIEVTSRGGLEKVIGDRKWKEVITVFKFPDTVTSASFALRKYYQSLLYDFEQVYYFRKQAPSFSMPDSGSRSILSSKEVDALNDLPVCPLQQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASQTSASIPASVNRKRSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGFLWNHLTDAERQIYQEKGRRDKERYRTEMEEYKASNNLSPQQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2153 323 SUPERFAMILY HMG-box 235 316 IPR036910 -
Prci8g2153 323 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 34 318 - -
Prci8g2153 323 SMART bright_3 54 145 IPR001606 GO:0003677
Prci8g2153 323 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Prci8g2153 323 Gene3D - 39 158 IPR036431 GO:0003677
Prci8g2153 323 SUPERFAMILY ARID-like 53 155 IPR036431 GO:0003677
Prci8g2153 323 MobiDBLite consensus disorder prediction 226 250 - -
Prci8g2153 323 Pfam ARID/BRIGHT DNA binding domain 58 140 IPR001606 GO:0003677
Prci8g2153 323 SMART hmgende2 246 315 IPR009071 -
Prci8g2153 323 CDD HMG-box_AtHMGB9-like 247 313 - -
Prci8g2153 323 Gene3D High mobility group box domain 231 323 IPR036910 -
Prci8g2153 323 MobiDBLite consensus disorder prediction 19 38 - -
Prci8g2153 323 SMART ARID_2 50 140 - -
Prci8g2153 323 MobiDBLite consensus disorder prediction 1 38 - -
Prci8g2153 323 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Prci8g2153 323 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Prci8g2153 323 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Prci8g2153 323 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2153 Prci-Chr8 24505775 24513881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2153 33 318 ARID Transcription Factor Family AT3G13350 49.836 4.70e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci8g2153 ARID 2.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2153 - - pcin:129299025 649.818