Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2152 ATGTCGAATCCTAAGCCCCCGCGCGAGCCTCTGACAGCCAGTTTGGTCGATTCGCCCCTTCGGTATCACACTGCGAATACTGCGGAATCAGATGGACAGTCCTCAGTCAGAAGTACGAAGTACTACCCACCTGCGAACGCTCTCTATGAGGACCTCGCTAGCAGTTCGGACTTTTTCTGGAATAACCTTCAGGATTTCCACAAATCCTTAGGCACCACATTAAAAGTTCCAACTATAGGAGGAAAGCCACTAGATCTATATCGCCTTTTTATTGAAGTAACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCGTAAATGGAAGGAAGTGATTACAGTCTTCAAATTCCCAGACACTGTAACCAGCGCATCATTTGCATTGCGCAAATACTATCAATCATTGCTTTATGACTTTGAGCAGATCAGTTGTTTCATACGATCAGATTCTGGTAGCAGGAGCATATTGAGCTCAAAGGAAGTTGATGCTTTGAATGATTTACCAGTTTGTCCGCTCCAGCAGCAGCTTGGCTCTTTGGTGCCTGGTACCATCGACTTGAAATTTGATGGTGGGTATGTAGTCACTGTAAATCTGGGTTCTGACCAGCTGAAAGGCGTGCTGTATCACGTTCCTCTCAATGCATCACAGACTTCTGCATCCATACCTGCTTCTGTGAATCGAAAGAGATCAAGGTTGGGTTCACATGATCCTTCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGTTAAAGCCTTTATACTATGGGCAAGAGAGAGCAATTAGTAAGAAGATTGGGTTTTTATGGAACCATCTCACTGACGCAGAAAGACAGATATATCAGGAGAAGGGAAGAAGAGATAAGGAGAGATACAGGACTGAAATGGAGGAATACAAAGCATCCAATAATTTGAGTCCTCAGCAGTAG 951 0.4448 MSNPKPPREPLTASLVDSPLRYHTANTAESDGQSSVRSTKYYPPANALYEDLASSSDFFWNNLQDFHKSLGTTLKVPTIGGKPLDLYRLFIEVTSRGGLEKVIGDRKWKEVITVFKFPDTVTSASFALRKYYQSLLYDFEQISCFIRSDSGSRSILSSKEVDALNDLPVCPLQQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNASQTSASIPASVNRKRSRLGSHDPSRPKSNRSGYNFFFAEHYARLKPLYYGQERAISKKIGFLWNHLTDAERQIYQEKGRRDKERYRTEMEEYKASNNLSPQQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2152 316 SMART hmgende2 239 308 IPR009071 -
Prci8g2152 316 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Prci8g2152 316 Gene3D High mobility group box domain 224 316 IPR036910 -
Prci8g2152 316 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 240 307 IPR009071 -
Prci8g2152 316 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 34 311 - -
Prci8g2152 316 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Prci8g2152 316 CDD HMG-box_AtHMGB9-like 240 306 - -
Prci8g2152 316 SUPERFAMILY ARID-like 53 144 IPR036431 GO:0003677
Prci8g2152 316 MobiDBLite consensus disorder prediction 291 316 - -
Prci8g2152 316 SUPERFAMILY HMG-box 228 309 IPR036910 -
Prci8g2152 316 SMART ARID_2 50 140 - -
Prci8g2152 316 MobiDBLite consensus disorder prediction 221 243 - -
Prci8g2152 316 Pfam HMG (high mobility group) box 240 307 IPR009071 -
Prci8g2152 316 Gene3D - 39 154 IPR036431 GO:0003677
Prci8g2152 316 MobiDBLite consensus disorder prediction 291 305 - -
Prci8g2152 316 Pfam ARID/BRIGHT DNA binding domain 58 140 IPR001606 GO:0003677
Prci8g2152 316 SMART bright_3 54 145 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2152 Prci-Chr8 24505771 24513881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2152 33 311 ARID Transcription Factor Family AT3G13350 48.505 3.17e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Prci8g2152 ARID 2.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2152 - - pcin:129299025 615.15