Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2148 ATGAAGAGGATTACCTCGATGGGTTCTGCAGATGGAATGTCTGCAATAGAACTTGAAAATAGAAACCTAATTATTGCTTCTTCATCATTTCCTAGAAGAAGCTCTTCCTTTGAAGAGGCTTCATCTCTAAATCATGACAAAGGGAAGCTCTCAGTTGTAAGAAGTAAGGTGTTTAGTAGCATAAAAGTGGTGGTCCTCTCTGCCAAAATAAACGTACTCATGCCCTTCGGCCCTTTGGCTATTTTGCTTGATAAGTTGTTTCATAATCATGCAATTGGTTTGTTTTACGGGACCTACAGAAGCATCCATTGTAATCTTAGAAGGGTAAGTGCTAGCTTTGATATTTTTCTGAGGATTTTGATTTTTAAAATTGGGAGTCTTTTGAATGCCACATTTGGAAATGCAACTGAGCTGATCATATCAATACATGCCCTCAAAAGTGGCTTGATTCGTGTTGTTCAGCAATCACTGTTAGGTTCAATTCTGTCAAATCTATTGCTAGTTCTTGGAAGTGCATTCTTTGCTGGTGGGCTAGTGTTTTATGACAGAGAACAAATATTTAACAAAGCAGATGCTACAGTAGATTTTGGGCTGCTTTTGATGGCTGTAATGGGCTTGTTATTTCCATCAGTTCTTCATTCTACAAATACAGAAGCTATTAATTGGAAGTCTGAGTTGGCTCTTTCAAGATTTACTAGCTGTATTATGCTTGTGGCTTATGCTTCTTATATAGCATTCCAACTCAACGGGCGTAAGAATGCACAAGCTCCAGTGGATGATGAGGAAAGGGGTCTGAGTGAAGTGGATTCAGCTGATGCAGAGGCTCCTGAGATTTCTATGTGGGAATCAATAATCTGGTTGTCTATCTTGACAGTGTGGATATCAATCCTGTCAGAATATTTGGTTAACACCATAGAGGGGGCATCGGAAGACTTGAAAATACCCATACCATTTATTAGTGTTATTCTTCTCCCTATAGTTGGGAATGCCACGGAACATGTCGGCACTATTATATTTGCTGTGAAAGACAAGCTAGACATATCTCTTGGAGTGGCTATAGGTTCTTCTATTCAAATATCCTTGTTTGTGATTCCTTTTTGTGTGGTTACGGGTTGGATAGTTGGGCGCCCAATGGACTTGAATTTTCAACTTTTTGAGACAACTTCTCTCTTCATAGCTGTTGTGATTGTTGCTTTCATGCTTCATGTAATGCTAATTGAGCAGTTCTGCCCTTGGAATTCCATTATGAATGATCGTTCACACCTATAA 1269 0.3916 MKRITSMGSADGMSAIELENRNLIIASSSFPRRSSSFEEASSLNHDKGKLSVVRSKVFSSIKVVVLSAKINVLMPFGPLAILLDKLFHNHAIGLFYGTYRSIHCNLRRVSASFDIFLRILIFKIGSLLNATFGNATELIISIHALKSGLIRVVQQSLLGSILSNLLLVLGSAFFAGGLVFYDREQIFNKADATVDFGLLLMAVMGLLFPSVLHSTNTEAINWKSELALSRFTSCIMLVAYASYIAFQLNGRKNAQAPVDDEERGLSEVDSADAEAPEISMWESIIWLSILTVWISILSEYLVNTIEGASEDLKIPIPFISVILLPIVGNATEHVGTIIFAVKDKLDISLGVAIGSSIQISLFVIPFCVVTGWIVGRPMDLNFQLFETTSLFIAVVIVAFMLHVMLIEQFCPWNSIMNDRSHL 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2148 422 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 43 401 IPR004713 GO:0006812|GO:0008324|GO:0016020
Prci8g2148 422 FunFam Vacuolar cation/proton exchanger 122 261 - -
Prci8g2148 422 NCBIfam calcium/proton exchanger 122 399 IPR004798 GO:0006816|GO:0015369
Prci8g2148 422 Pfam Sodium/calcium exchanger protein 123 248 IPR004837 GO:0016020|GO:0055085
Prci8g2148 422 Pfam Sodium/calcium exchanger protein 284 402 IPR004837 GO:0016020|GO:0055085
Prci8g2148 422 Gene3D - 269 416 IPR044880 -
Prci8g2148 422 Gene3D - 122 261 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2148 Prci-Chr8 24449742 24467458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2148 17 402 Antiporters AT1G55730 57.841 2.71e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2148 K07300 - qsu:112036201 449.899