Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2141 ATGGGCTCCAGGAAGGGTGACAATCCTCACTCCGGCGATGGTGCCAGTCCTGGCAAAATCTTCATTGGAGGGTTAGCTAGAGATACAACACTCGAACAATTTGTCAAGTATTTTGAGAAGTATGGGGAGATAACAGACTCGGTGATAATGAAAGATCGGCATACGGGTCGACCCAGGGGTTTTGGTTTCATTACCTACGCAGATCCTTCTGTTGTTGACCGCGTTATTCTGGAGAACCATGTGATCAATGGCAAACAGGTGGAGATCAAAAGGACAATTCCAAAGGGCTCATCACAGGCTAATGATTTTAAAACCAAGAAGATATTTGTCGGTGGTATCCCAACCTCAGTAAGCGAAGATGAATTGAAGAACTTCTTTTCAAAGTATGGAAAGGTTGTGGAGCATGAGATTATTCGTGATCATACTACTAAACGCTCTCGAGGATTTGGATTTATAGTGTTTGACGGTGAAAAAATTGTTGATAATTTGCTAGCAAATGGAAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCCAAGAAAGCCTCAAACCCAGCATCTTTTCCTCCATTTGGTAGTGATAGGGCACGTCCATACAGTGATGGTTATGGTGGATTTGGCGAATCCTATAGCAGTTTTGGCAGTGGCAGTTTTGGTCCTGCTTCTTATAGGTCACTTGGAGGTTTCAGCAGCAGGCTTGGTGATTATGGTGGGTATGGTGGTGATGAATTTGGTGATAGTTTTGGAGGCTATGGTGGTGGTGGTGGTTATGCTGGCTATCGAGGTGATTCATCATTTGGCTATTCTAGCCGCTATGGTTCCTATATGGGGGGCCTTGGTGGTGGATATGGTGGAAGTGGACTAGGTGCATACGGGCGAGGCACTGGGGGCTTTGCAAGCTATGGTGGACCTGGTTCTGGTGGGGGTTATGACTCTGGCCCGGGTGCCGGCTATGGTGGGCCAGGGGCACTGTATGGTAGTAGAGGAGGTTATGGAGGCAGTAGTCGTTACCACCCTTATGCAAGATAG 1044 0.4684 MGSRKGDNPHSGDGASPGKIFIGGLARDTTLEQFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDRVILENHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDGEKIVDNLLANGNMIDMAGTQVEIKKAEPKKASNPASFPPFGSDRARPYSDGYGGFGESYSSFGSGSFGPASYRSLGGFSSRLGDYGGYGGDEFGDSFGGYGGGGGYAGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGTGGFASYGGPGSGGGYDSGPGAGYGGPGALYGSRGGYGGSSRYHPYAR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2141 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Prci8g2141 347 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Prci8g2141 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Prci8g2141 347 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 347 - -
Prci8g2141 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 223 - -
Prci8g2141 347 Gene3D - 18 96 IPR012677 -
Prci8g2141 347 SMART rrm1_1 19 90 IPR000504 GO:0003723
Prci8g2141 347 SMART rrm1_1 107 180 IPR000504 GO:0003723
Prci8g2141 347 Gene3D - 97 218 IPR012677 -
Prci8g2141 347 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Prci8g2141 347 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Prci8g2141 347 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Prci8g2141 347 SUPERFAMILY RNA-binding domain, RBD 100 213 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2141 Prci-Chr8 24371870 24374779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2141 4 170 Eukaryotic Initiation Factors Gene Family AT2G23350 24.468 5.74e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2141 K12741 - gmx:100801373 412.92