LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g2133	ATGGTGCTTGATGCTGATGGAGTTGGGTGTTCTTCAAGCTCTTGTGGATCAACTAAGATATGGAAGTATGATGTGTTCTTGAGTTTTCGAGGTGAAGACACTCGCACAAGCTTTACTGATCATTTGTATGATGCTTTAATACGCCAAGGATTGAGAACTTTCCGGGATGAAGAAGGACTTGAGAGGGGACAATATATTAACCCAAGTTTACTTGAAGCAATTGAAGAATCTCGTTCTGCAATTGTTGTGCTCTTCCCAGGATATGCTTCTTCAACATGGTGTTTGGATGAGCTCCAAAAGATCCTTCATTCAAAAAAAGAGTTGGGTCTTCAAGTATTTCCAATCTTTTACGGTGTAGATCCATCTGATGTGAGAAAACAAAAGGGAAGTTTTGCAGAAGCATTCATGAAGCATGAAGGAAGATTAACGCAAGACAATATGAAGGTGCAAACATGGAGGGATGCTTTAGAAGAAGTTGCTAGCATATCTGGTTGGGACTCCCAAAATAAGCATGAAACAAAATTCATTGAAACTATTGCTAAAGAAATGATGTCTAAGTTACTTGATGAATCGCCATCTGACCTTAGTGTGTTAGTTGGAATTGAATCAAAATTAGATGAGTTGGAGTCAATCATAGCAAGTGATTCGAAAGGAGTTCAATCTATAGGAATTTGGGGAACAGGAGGCTTAGGCAAAACTACTCTTGCAAGAGGTTTTTATGAGCGAAAATGCAAAGACTTTGAGGTTTGTTGCTTTCTTCATAATATCAGAGAGGTATTTAACAAAGGTGGTTTGATTTCATTGCAAAGAAAACTTCTTTTTTCTTTGAATAAAAGAAGTGCAGAAGTGGATGATTGTTTTGAAGGAATGAAGTTGATAAAAAACATGGTGGTGAATAGAAAAATTCTTCTAGTCCTTGATGATGTGAGTAAGATAAGCCAACTTGAATATTTGGCTCCAGAGCAAGGATGGTTAGGCAATGGGAGCAGAATATTAATAACAACAAGAGATATGCATTTGTTATCATCATATGATGTATCTACTCAGTATAACATCAAATTCTTGAGTGATGACCAGTCCCTTCAACTTTTCCATCAAAATGCTTTTAAAGGAAAAAATCAACCAAATGAAGGTTACTTAAAGCTTTCTAAAAATGTGATAAAGTATGCTGGAGGCCTTCCTTTGGCTCTCAAAGTGTTAGGTTCATCTCTTTGTGGAAGAACTATAGTGGAATGGGAGGATGCACTTTCCAATTTCAAGAAGGTTCCGCCAAATGATATGCTGAAGATACTTAAAGTGAGTTATGACGGATTAGATGATAAGGAGAAGACTATATTCTTGGATGTTGCTTGCTTTTTCAATGGGATGGCCAAAGATTATGTCATACAAATTTTAGAAACATTTGATGATGATCTTCACCCAAAATTTGGAATAAAGGTTCTTACTGAGAAATCACTACTAGTAATCAATCATGAAGGGCATTTGTGGGTGCATGATATTCTTCAAGATATGGGTAAATATATTGTCCTTCAAGAATCACCTAATGATGCTAGTAAGCGTTCTAGGATATTGTCTTTGAAGGATGCCAATGATATCCTAAAAAGAAATAAGTCTCTACAAAGGCTGATGTCCGTTGATTTATCTCATTCCAAATACCTCATAAAAACCCCAAATTTTGATGAAATTCCTAATCTTGAACAATTGATTCTCAAAGGGTGTCCTAACCTTGTTGAAATTCACCAGTCTCTTGGGCAACACAAGAATCTTGTTATTGTTAATTTGAAAGGGTGCACAAAAGTTAAAACCCTTCCAAGAAAATTTGAGATGGATTGCTTACAGACTTTTGTTTTATCTGGTTGTTCAAAAATTAGCAAACTTCCTGAGTTTGGAAAGGATATGAAATGTCTCTCTAAGCTTGATTTAGATGAAACTGCTATATCCGAACTACCTAAGTCACTGGGCAATTTGATTGGTCTTGCTGAATTAAATTTGTCAGGCTGCAAAAATCTGGTTTGCCTTCCAAACAATGTCCGTAGAATGACAGCCAGGAATATTATCACAATTTCTAGTTGGTCAAAGCTTTCAAGGATGCTAGAGGATCCAACCCGCGTCACGTACCTAACTATGGTGGATGAGTCTCTCAGCAGGGGTTTTTTACATACACAAGGCTCAAACTCGAGACCTTGCTTAAGCAGAACTGAGCTGCTTATCACTCGGACCAATCCTTGTTGGTGTCAAGCACATTCTTCAATGTCATGGAGTTGCCTTTCCCTTCTCAAGAAGGCATTTGGGCTACAAAGGCCTTCAAGCTCAATAAATCTTTTCTTGTCCCCTTCTTTTTCATGCTTGAGCGAATTAAATTTAGGTTATTGTAATCTCTATGATGGATCACTTCCTAATGACATTAGCAGCTTTACATCATTGGCAACATTAAATTTAAGTGGAAACAATTTCATTGACTTACCATCTGGCCTCATTTCCAATCTTTCGAAGCTTCAATGTATTGGTCTCTTTGATTGCCCAATACTTAAGTCCTTGCCACAACTTCCGTCAAATCTGTCAGTTATTCTCGCGAGTGGTAGTCCATCAATGGAACATTACATATGTTCGCAGAAACTATGGGAGTTCATTGATTCATTCCAATCTCAGGTTCACAATTACAATGACCTCTCACTAGAAGAATTTTATGGAGGATATAAAATTGTCCGTTTAAGTCCTCTCTCTGCAATTTTGACCCAGGATTCACAAATTCCTGACTTCCTCATGCAACCTAATCGTGTATTAGCAACTTCAGGTAATGAAGTGCCATCATGGTTTCATAATCAAGAATACTTTTGTGAGAAAGAATTCAGTTATCCAAATGTGTCATTCATACTAAGCATACCTGATTATTGTCGTTCAAGTGAATGGTGGGGCATAGCCACATGCTTAGTGCTAGAAAATGATTTGGCCTATGAACAAGAAGTTGAGTTTGTCTGGTGGACATGCAGATTTCCTAATGATCAATTTCCTAATACCTATGGTATCTATATCAGTTGGTTACTATCAAATTGGAGTCATCAACGCTGTATTATATATATTCCTTGTTCGTCTTTGGTTGTAAATGGACTTCAAGTGGTATTTTCTGTTGGAAATACATTTGACAATGAGTCCCCAAAGGTTAACCCAAAGGTCAAACTAAGGAAATGTCGGTGGCGTGTGTTGTGTAAAGGAGATGTTGAAACATGGAATTAA	3234	0.3723	MVLDADGVGCSSSSCGSTKIWKYDVFLSFRGEDTRTSFTDHLYDALIRQGLRTFRDEEGLERGQYINPSLLEAIEESRSAIVVLFPGYASSTWCLDELQKILHSKKELGLQVFPIFYGVDPSDVRKQKGSFAEAFMKHEGRLTQDNMKVQTWRDALEEVASISGWDSQNKHETKFIETIAKEMMSKLLDESPSDLSVLVGIESKLDELESIIASDSKGVQSIGIWGTGGLGKTTLARGFYERKCKDFEVCCFLHNIREVFNKGGLISLQRKLLFSLNKRSAEVDDCFEGMKLIKNMVVNRKILLVLDDVSKISQLEYLAPEQGWLGNGSRILITTRDMHLLSSYDVSTQYNIKFLSDDQSLQLFHQNAFKGKNQPNEGYLKLSKNVIKYAGGLPLALKVLGSSLCGRTIVEWEDALSNFKKVPPNDMLKILKVSYDGLDDKEKTIFLDVACFFNGMAKDYVIQILETFDDDLHPKFGIKVLTEKSLLVINHEGHLWVHDILQDMGKYIVLQESPNDASKRSRILSLKDANDILKRNKSLQRLMSVDLSHSKYLIKTPNFDEIPNLEQLILKGCPNLVEIHQSLGQHKNLVIVNLKGCTKVKTLPRKFEMDCLQTFVLSGCSKISKLPEFGKDMKCLSKLDLDETAISELPKSLGNLIGLAELNLSGCKNLVCLPNNVRRMTARNIITISSWSKLSRMLEDPTRVTYLTMVDESLSRGFLHTQGSNSRPCLSRTELLITRTNPCWCQAHSSMSWSCLSLLKKAFGLQRPSSSINLFLSPSFSCLSELNLGYCNLYDGSLPNDISSFTSLATLNLSGNNFIDLPSGLISNLSKLQCIGLFDCPILKSLPQLPSNLSVILASGSPSMEHYICSQKLWEFIDSFQSQVHNYNDLSLEEFYGGYKIVRLSPLSAILTQDSQIPDFLMQPNRVLATSGNEVPSWFHNQEYFCEKEFSYPNVSFILSIPDYCRSSEWWGIATCLVLENDLAYEQEVEFVWWTCRFPNDQFPNTYGIYISWLLSNWSHQRCIIYIPCSSLVVNGLQVVFSVGNTFDNESPKVNPKVKLRKCRWRVLCKGDVETWN	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g2133	1077	SUPERFAMILY	Toll/Interleukin receptor TIR domain	20	165	IPR035897	-
	Prci8g2133	1077	Gene3D	-	15	186	IPR035897	-
	Prci8g2133	1077	SUPERFAMILY	RNI-like	539	862	-	-
	Prci8g2133	1077	PRINTS	Disease resistance protein signature	296	310	-	-
	Prci8g2133	1077	PRINTS	Disease resistance protein signature	537	553	-	-
	Prci8g2133	1077	PRINTS	Disease resistance protein signature	390	404	-	-
	Prci8g2133	1077	PRINTS	Disease resistance protein signature	221	236	-	-
	Prci8g2133	1077	Gene3D	Ribonuclease Inhibitor	510	757	IPR032675	-
	Prci8g2133	1077	Gene3D	Ribonuclease Inhibitor	765	908	IPR032675	-
	Prci8g2133	1077	FunFam	Disease resistance protein (TIR-NBS-LRR class)	19	189	-	-
	Prci8g2133	1077	ProSiteProfiles	TIR domain profile.	21	187	IPR000157	GO:0007165
	Prci8g2133	1077	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	23	685	IPR044974	GO:0006952
	Prci8g2133	1077	SUPERFAMILY	"Winged helix" DNA-binding domain	427	533	IPR036390	-
	Prci8g2133	1077	SMART	till_3	22	162	IPR000157	GO:0007165
	Prci8g2133	1077	Gene3D	-	354	439	IPR042197	-
	Prci8g2133	1077	Pfam	NB-ARC domain	209	424	IPR002182	GO:0043531
	Prci8g2133	1077	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	448	IPR027417	-
	Prci8g2133	1077	Gene3D	-	187	352	IPR027417	-
	Prci8g2133	1077	Pfam	TIR domain	22	200	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g2133	Prci-Chr8	24092590	24098190	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g2133	199	865	WRKY Transcription Factor Family	AT5G45050	28.286	6.06e-54	204

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g2133	-		-	pcin:129318967	1320.45