Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g2075 ATGCGACGATCTAGAGCCGCAGATCCAACAACAGCCACAATCAGCAAACAGATCGGTCTAGAATTGAAGAACCCAGTGAAGGAAATCAGATTCAGAGGCGTGAGGAAGCGGCCATGGGGTCGATTCGCCGCGGAGATCAGAGATCCATGGAAGAAAGCGCGTGTCTGGCTCGGCACCTTCGACTCCGCCGAGGATGCTGCGCGTGCGTACGACGCGGCGGCTCTGTCGTTTCGCGGACCAAAGGCCAAGACCAATTTCCCTTTGACGAACCCTGAATCGGGCTTGTCTCAGATTCCTTTTTATAATCAGAGAGATTTCGAAGACCATCATCGTAATCTCTCGAAGTTCGATCCTTCCGTTCAGGTGAATCGGCCGACGACGAGCAGTATGAGCAGCACCGTCGAGTCTTTCAGTGGTCCGAGGTTGTCCAATCCGGTGCTGTCGGTCCCGAGGGTTCAGCGAAGGCCTGTGAACCCTGTTCCACCAGATGATTGCCATAGTGATTGTGATTCTTCGTCTTCGGTAATTGAGGATGAGGATTGTGTCCTCACTTCTTCGTTCTGCAAAATCCTCCCGTTCGATCTGAACCACCCGCCGCAGATGGACGACGACAACGGCCTCTCTGCCGATGACCTCCAAGCCACCGTCTTACGTCTCTGA 660 0.5409 MRRSRAADPTTATISKQIGLELKNPVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAALSFRGPKAKTNFPLTNPESGLSQIPFYNQRDFEDHHRNLSKFDPSVQVNRPTTSSMSSTVESFSGPRLSNPVLSVPRVQRRPVNPVPPDDCHSDCDSSSSVIEDEDCVLTSSFCKILPFDLNHPPQMDDDNGLSADDLQATVLRL 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g2075 219 MobiDBLite consensus disorder prediction 117 171 - -
Prci8g2075 219 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 180 - -
Prci8g2075 219 Gene3D AP2/ERF domain 29 89 IPR036955 GO:0003700|GO:0006355
Prci8g2075 219 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 Pfam AP2 domain 30 79 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
Prci8g2075 219 FunFam Ethylene-responsive transcription factor 2 30 88 - -
Prci8g2075 219 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 CDD AP2 30 87 IPR001471 GO:0003700|GO:0006355
Prci8g2075 219 MobiDBLite consensus disorder prediction 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g2075 Prci-Chr8 22668895 22670812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g2075 1 219 AP2-EREBP Transcription Factor Family AT1G50640 53.390 1.45e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci8g2075 AP2 8.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g2075 K09286 - qsa:O6P43_014526 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g2075 8 22668895 22670812 Prci8g2075 8 22668895 22670812 ECH