Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1980 ATGGATGCTAATGTTGAAGCTGCCTATTGCTCGTCTTCCATGAGCTCGAGAATCCCACCATGGAAGTATCATGTTTTCTTGAGTTTCAGAGGGGAAGACACCCGAAAAGGCTTCACAGCTCATTTATATGCTGCTCTTCAACACAAGAGTATCATAACCTTCATAGATAATGAGCTTCGAAGAGGAGATGTTATTTCCTTTCAACTCCTTCAAGCAATCGAGGATTCTCTCATCTCCATTGTTATTCTTTCTCAGAATTATGCTTCTTCAAGTTGGTGTTTGGATGAACTCCAAAAGGTTCTTGAATCTAGGGAATCACTGGGTAGGGAAGTTTTTCCTGTGTTCTATAATGTAGACCCATCTGATGTTCGACATCAAAGGGGAGCATTTGCATATGCTTTTCAAAAGCACAATGAGAGATTTCGTGAAGAAGGGAAGGTACAAAGATGGAGAAATACCTTGAAAGATGTTGCAAATTTAGCTGGCTATCACTCTAACGATCAGCTTGAAACAAAATTCATCGAAGAAATTGTTGCTGGTGTATGGACAAAACTACAGCGTATCCTGCCATGTCATAAAATCAACAAATTTGTTGGAATGGAGTCAAAGATAAAAGAAGTTGATTCAATTTTAAAGATAGGACTTAATGATATTCGCCTATTAGGAATTTGGGGGATGGGCGGTATAGGAAAAACATCTCTTGCAAGATTTATCTATGAGACAAACTATAATCAGTTTGATCTTTGTTACTTTTTAGCTAATGTTAAGGATGTTTGTGAAAAGGAAGGACTAGTTCCCTTGCAGAGAAAATTTCTTTCACATAATAGGAAGCTGAAGGGCATAGAATTCAATGATGCATATGATGGAATGAAGAAAATGATAAGTGTTCTATGCAACCAAAAGGTTTTGATAGTACTTGATGATGTAAGTGACATGAGCCAACTTGAATACCTTGCCATAAAGCAAACTTGGTTGGGTCCAGGAAGTAGAGTAATAGTCACAACTAGGAATATGCAGCTATTGAAAACACATGGAGAATTTGACATGTATGAGGCAAAATTATTGAATGATGAGGAATCTCTTCAATTGTTTTGCCAAAAGGCTTTTAAAAGGGACAAACCAATAGAAGACTATATAGAGTTGTCTGGAAGTGTGGTTAAGTTTGCTGCAGGCCTTCCTTTGACTCTTGAAGTATTGGGATGCTATCTTTATGGAGAAAGTATACTTGAGTGGAAAGATGCTTTGGAGAAAATAAAGGAAGTTCCTCCAAATGACATTTTGAAGAAACTCCAAATAAGTTATGATGCATTAGATCATTTGGAGAAAAAGATATTTTTAGATATTGCATGCTTTTTCAAAGGAATGCAAAAAGATAAAGTGATACACGTATTAGACATTTGTGGTTTTCATCCAATAATTGGAATACGAAAACTTGTGGAGAAATGCTTGTTATTTGAATATCAAGACTATCATAATAAATGGTATTTGGGTATGCATGATATGGTACAAGAAATGGGGAAAAGTATTGTTTCAGAGGAATCACCAAGTGATGCTAGTAGACGTAGTCGGTTATGGTCAATAGAGGATATTATTCATGTACTGACCAAAAATAAGGGAACTAGCTTGATTGAGATTATACATCTTGAATCATTGTCTAAGCAACTTGAAACAAGATGGGGTCCTGAAGTATTCTTAATGATGTATAATCTTAGAATACTTAGCATCAAATCATGTGATGTGTGCCTCCCCTTGGGACTTGAATGTTTTTCGAGTTCATTAAAAATTCTTGACTGGGAGAAATATCCATTAAAATCCCTCCCACTTGGTGTTCAACCAAATGAGCTCGTTCAGATCAAAATGCATAATAGTAAAATCACAAAACTTTGGAATGAAACCCAGATGTCAGGGAAGTTAAAGATCATTGATTTGAGCCATTCGAAAGATTTAATTCAAACTCCTAATTTTTCATTGCTACCAAATTTGGAGCAACTAGCTCTTAAAGGTTGCACTAAACTTGTTGAGGTGCATCCATCACTTGGACATCATAAGAAAATTATTGAAGTGAATTTAGAAGGTTGTAAAAATCTAAAAACACTTCCTTGTAGGTTGGAAATGGTTTCTCTAAGAAAATTGGTTCTTTCTAGTTGCTACAAATTTAAAAGGCTTCCTGAGTTTGGAGAAAATATGAAAAATTTGTTAATTCTGAAGTTGAAGGATTGCCAAAATCTTTTATGTCTTCCAAGCACTATTGATAACCTAAAATCTCTCAAAACTCTTGATATATCTGGTTGCACAAAATTTTCATCATTACCAGAAAATTTGGATGAAATTGGAAGTATAGAGGAGCTTGATGTCAGTAAATCTTCTGTAAAAGAAATACCTTCATCCATTCTTGGCCTAAAATGCTTGAAGAAACTAAATGCAAATGGATGCAATGGAATTGTACTAGACTCTTCACTGAGCTTACTTTCTCCAATTCTAAGGGTCTTTGGGTTCAATAGTTATAAGGCTCCCTTGAGGTTGACATTGCCTCCTTCTTTCTCTGGCTTATCCTCATTGAGGGAATTGAAGTTAAGAAATTGTAATCTAAGTGTCAGATCAATTCCAAATGATCTTGGTTGCTTACCATCTTTGGAGTGTCTTGATCTTAGTGAAAATGATTTCAGCAACCTACCTTCTGGAAGTTACGTTCTTCCACCTTCATTCTCAAGTTTGTCCTCATTGAGAAGTTTATGTTTGGCAAATTGTAATCTTTATGATGGTTCAATTCCTAATGATCTTAGTCCCTTATCATCCTTGGAAGTATTATATCTATCAGGGAACAATTTTACTAATCTACCATCTACTTTCATCTCTAAGCTCCAGGCTCTACGAGATCTTTACCTGGTTGATTGCAAAAGGCTTTTATCATTGCCAGATGTTCCACCCAATATTGAATTTCTTGATGCAGTTTGTTGTCATCCATCAATGAGAATCTTATCATCTCCATATTTGCTATGTAGATTTCTTTTATCATCTTATAATAATAAAGTACAAGATTCAAGACCTTGGTTTTTTGCTCCAGGGAGTGAAATTCCACCTTGGTTTTATAATCAAGACTTTGATTTTCTTGACGATGAAAAAAGTTGCATCTCAATAAAAGTAGACACTTCTCATTTTTATGGTTCAAGTGAAAGCTATAGAATTTTTGTTTGTGTTGTGATACAAAATGTGGCCCCGAAAAGGCCAATGAACCTAAAAGGTTACTTTTCAATTCTTTGCAACAGCATTGGATTTGGGTTACATGATTCGGAAGCCAAAAACCCTCATTTGTATTTTTCTGTTGTGCCTCCCTCTTATGTGAAAAATGCTTTCAATAACCAAGTTGAGATACAATTTCAAACAACTTGGGAATCGTCACTTGCTAATGATAGAAGTGAAAAGGTAGAGTTAATAAGAAAGTGCGGATGGCGTGTAGCAAGTAAGGAAGAAATTGAAGAGTGCATGCAACACCAAATGCCATAA 3504 0.355 MDANVEAAYCSSSMSSRIPPWKYHVFLSFRGEDTRKGFTAHLYAALQHKSIITFIDNELRRGDVISFQLLQAIEDSLISIVILSQNYASSSWCLDELQKVLESRESLGREVFPVFYNVDPSDVRHQRGAFAYAFQKHNERFREEGKVQRWRNTLKDVANLAGYHSNDQLETKFIEEIVAGVWTKLQRILPCHKINKFVGMESKIKEVDSILKIGLNDIRLLGIWGMGGIGKTSLARFIYETNYNQFDLCYFLANVKDVCEKEGLVPLQRKFLSHNRKLKGIEFNDAYDGMKKMISVLCNQKVLIVLDDVSDMSQLEYLAIKQTWLGPGSRVIVTTRNMQLLKTHGEFDMYEAKLLNDEESLQLFCQKAFKRDKPIEDYIELSGSVVKFAAGLPLTLEVLGCYLYGESILEWKDALEKIKEVPPNDILKKLQISYDALDHLEKKIFLDIACFFKGMQKDKVIHVLDICGFHPIIGIRKLVEKCLLFEYQDYHNKWYLGMHDMVQEMGKSIVSEESPSDASRRSRLWSIEDIIHVLTKNKGTSLIEIIHLESLSKQLETRWGPEVFLMMYNLRILSIKSCDVCLPLGLECFSSSLKILDWEKYPLKSLPLGVQPNELVQIKMHNSKITKLWNETQMSGKLKIIDLSHSKDLIQTPNFSLLPNLEQLALKGCTKLVEVHPSLGHHKKIIEVNLEGCKNLKTLPCRLEMVSLRKLVLSSCYKFKRLPEFGENMKNLLILKLKDCQNLLCLPSTIDNLKSLKTLDISGCTKFSSLPENLDEIGSIEELDVSKSSVKEIPSSILGLKCLKKLNANGCNGIVLDSSLSLLSPILRVFGFNSYKAPLRLTLPPSFSGLSSLRELKLRNCNLSVRSIPNDLGCLPSLECLDLSENDFSNLPSGSYVLPPSFSSLSSLRSLCLANCNLYDGSIPNDLSPLSSLEVLYLSGNNFTNLPSTFISKLQALRDLYLVDCKRLLSLPDVPPNIEFLDAVCCHPSMRILSSPYLLCRFLLSSYNNKVQDSRPWFFAPGSEIPPWFYNQDFDFLDDEKSCISIKVDTSHFYGSSESYRIFVCVVIQNVAPKRPMNLKGYFSILCNSIGFGLHDSEAKNPHLYFSVVPPSYVKNAFNNQVEIQFQTTWESSLANDRSEKVELIRKCGWRVASKEEIEECMQHQMP 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1980 1167 Gene3D - 187 347 IPR027417 -
Prci8g1980 1167 Gene3D Ribonuclease Inhibitor 777 895 IPR032675 -
Prci8g1980 1167 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 448 IPR027417 -
Prci8g1980 1167 Pfam TIR domain 22 190 IPR000157 GO:0007165
Prci8g1980 1167 Pfam NB-ARC domain 216 435 IPR002182 GO:0043531
Prci8g1980 1167 Gene3D - 354 438 IPR042197 -
Prci8g1980 1167 SUPERFAMILY RNI-like 542 697 - -
Prci8g1980 1167 SMART till_3 22 160 IPR000157 GO:0007165
Prci8g1980 1167 ProSiteProfiles Leucine-rich repeat profile. 932 953 IPR001611 GO:0005515
Prci8g1980 1167 Gene3D Ribonuclease Inhibitor 896 994 IPR032675 -
Prci8g1980 1167 SUPERFAMILY L domain-like 647 973 - -
Prci8g1980 1167 SUPERFAMILY "Winged helix" DNA-binding domain 425 534 IPR036390 -
Prci8g1980 1167 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Prci8g1980 1167 Gene3D Ribonuclease Inhibitor 706 776 IPR032675 -
Prci8g1980 1167 Gene3D Ribonuclease Inhibitor 534 705 IPR032675 -
Prci8g1980 1167 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
Prci8g1980 1167 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 723 IPR044974 GO:0006952
Prci8g1980 1167 Gene3D - 19 186 IPR035897 -
Prci8g1980 1167 PRINTS Disease resistance protein signature 220 235 - -
Prci8g1980 1167 PRINTS Disease resistance protein signature 296 310 - -
Prci8g1980 1167 PRINTS Disease resistance protein signature 389 403 - -
Prci8g1980 1167 PRINTS Disease resistance protein signature 751 767 - -
Prci8g1980 1167 ProSiteProfiles Leucine-rich repeat profile. 877 898 IPR001611 GO:0005515
Prci8g1980 1167 SMART LRR_typ_2 850 874 IPR003591 -
Prci8g1980 1167 SMART LRR_typ_2 930 953 IPR003591 -
Prci8g1980 1167 SMART LRR_typ_2 875 898 IPR003591 -
Prci8g1980 1167 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1980 Prci-Chr8 18927811 18932814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1980 23 806 WRKY Transcription Factor Family AT4G12020 31.995 1.16e-101 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1980 - - pcin:129315690 1443.33