Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1961 ATGGAAAGCTTACAGCAGCAGCAGCAGCTTGGAGGTAGCAGACGCATCGCGGCCGTGGACGCGTCTCCTCCGACGACGTCGGTCCAAAATGCAGAGTCAAAGCAACAGGAAAAACCTGGGTGGAGGAAGCTTTTGGCATTTATAGGTCCAGGCTTCCTGGTTTCCTTGGCTTACCTTGATCCTGGAAACTTGGAAACTGATCTCCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGGTGATTCTCACTGGGCTCATCTTCGCCCTCATCATTCAGTCGTTGGCTGCAAATCTTGGCGTAAGCACTGGTAAACACCTTTCGGAATTGTGTAAAGCTGAGTATCCATGGTTTGTCAAGTATTGCTTATGGCTATTAGCTGAGCTTGCTGTTATAGCCGCAGACATCCCTGAAGTAATTGGCACTGCCTTTGCTCTCAACATACTCTTCCACATTCCCGTATGGGGTGGAGTTATATTGACTGGTTTTAGCACTCTCTTGCTTCTGGGTCTCCAAAGATTTGGGATAAGGAAGCTGGAATTGCTGATATCAACGCTAGTGCTGATAATGGCGGGATGTTTCTTCGGAGAAATGAGCTACGTGAAGCCACCAGCTTCTGGGGTTGTCAAAGGCATGTTTGTCCCCAAACTCACTGGTCAGGGAGCCACCGGCGACGCCATTGCCCTCTTCGGTGCTCTCATCATGCCGCACAACCTTTTTCTCCACTCTGCTCTTGTGCTCTCCAGAAAAGTCCCCAACACCGTGCGCGGCATCAATGACGCATGCAGATACTTCCTCATGGAGAGTGGGATCGCACTTTTTATAGCGTTTCTAATCAATGTGGCAGTAGTCTCTGTATCTGGCACTGTTTGTGCCTCTGCCAATCTTTCTGACGAAAACACAGATCATTGCAGTGATCTCACTCTCAACTCTGCTTCTTTCCTTCTCAAGAATGTTCTGGGACGGTCCAGCTCAACCATATATGCCATCGCATTACTAGCCTCAGGCCAAAGCTCTGCTATCACTGGCACTTATGCAGGGCAATACATCATGCAGGGTTTCTTGGATCTGAAGATGAAAAAATGGATTAGGAACTTGGTGACTCGGACTATTGCCATCACACCAAGTCTTATTGTGTCTCTCATTGGTGGATCCTCAGGGGCAGGACGACTCATTGTCATTGCCTCGATGATACTTTCATTTGAGCTTCCATTCGCTTTGATCCCACTTCTCAAGTTTAGCAGCAGCAGCACCAAGATGGGTCCTCACAAGAATTCTATAATTATCATCATAATATCATGGATTCTTGGGGCAGGGATCATTGGGATCAATGTGTATTACCTAAGTACAGGATTTGTGGGTTGGCTGATTCATAACAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTCCCTTTGATGGCAATTTACATCGCAGCTGTAATATACCTAACCCTAAGAAAAGACACCGTGAAGACATACATTGAGACCAAGAACGACCCCACAGTACAAACCCACATGGAAAAAGGATTCATGAATCCTAATAATGGCCAATTGGAACTGAGTCACGCTCCTTACAGAGAGGATTTAACCGACGTCTCATTTCCTGAATAG 1623 0.4695 MESLQQQQQLGGSRRIAAVDASPPTTSVQNAESKQQEKPGWRKLLAFIGPGFLVSLAYLDPGNLETDLQAGANHRYELLWVILTGLIFALIIQSLAANLGVSTGKHLSELCKAEYPWFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWGGVILTGFSTLLLLGLQRFGIRKLELLISTLVLIMAGCFFGEMSYVKPPASGVVKGMFVPKLTGQGATGDAIALFGALIMPHNLFLHSALVLSRKVPNTVRGINDACRYFLMESGIALFIAFLINVAVVSVSGTVCASANLSDENTDHCSDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKKWIRNLVTRTIAITPSLIVSLIGGSSGAGRLIVIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIIIIIISWILGAGIIGINVYYLSTGFVGWLIHNSLPKVANVFIGIIVFPLMAIYIAAVIYLTLRKDTVKTYIETKNDPTVQTHMEKGFMNPNNGQLELSHAPYREDLTDVSFPE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1961 540 Hamap Divalent metal cation transporter MntH [mntH]. 24 452 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 MobiDBLite consensus disorder prediction 1 36 - -
Prci8g1961 540 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 42 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 NCBIfam Nramp family divalent metal transporter 49 415 - -
Prci8g1961 540 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 29 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 176 197 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 123 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 226 249 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 151 170 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 336 355 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 364 381 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 PRINTS Natural resistance-associated macrophage protein signature 396 415 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 Pfam Natural resistance-associated macrophage protein 65 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci8g1961 540 MobiDBLite consensus disorder prediction 20 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1961 Prci-Chr8 18785610 18793090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1961 12 540 Inorganic Solute Cotransporters AT1G15960 58.271 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1961 K21398 - gmx:100787785 860.136