Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1956 ATGGCAATCATTAGCTCTGGAACAACCTCTATCTCCTCTTCCATGAACTCAAACATCCCTCCATGGAAGTATCATGTCTTCTTGAGTTTTTGTGGAAAAGACACCCGCAAAGGCTTCACTGGCCATGTATACGCTGCTTTGCAGCAAAGGGGTATCATAACTTTTGTTGATGAGGAGCTGAAAAGAGGAGAGACCATTTCTGATCAATTAAGTCAAGCAATTGAAGAATCTCTCATCTCCATTGTTATTCTATCCCCTAATTATGCTTCTTCTCGTTGGTGTTTGGATGAACTCCAAAAGATTCTTGAATCTAGAAAATCTTTGGGTAGAGAAGTTATCCCGATCTTCTATAAGATCGATCCAACTTTTGTACGTCATCAAAGAGGTACCTTTGAGAGGGCCTTTAAAAAGCATAGCGAGAGATTTGCTCTAAACCAAGTGAAGGTGCAGAAATGGAGAGATGCCTTAGAAGAAGTTGCAAATATATGTGGCTTTGACTCTAAAAATCAGCTAGAGACAAAACTCATTGAAGAAATTACTAAAGAAATATGGGCAAAGCTACAACCTAAATTACCATATTGTTTCCATGATGAGCTTGTTGGCATTAACTCCAGGATAGAAGAAGTGAATACACTTTTAAGAATTGGATTGGTTGATATTCACTTAATAGGAATATGGGGTATGAGTGGTATAGGAAAAACAACTCTTGCAAGAATTATTTATGAGAAAATACGTCACCAGTTTGACATTAGTTGTTTTATTACTAATGTAAAAGAAAGCTATGTGACTAATGGTTTTGTTGGCTTGCAAAGAAAACTTCTTTCCAAGCTCAAGATAAGAGACTTAGAAGTTGATGATGCATATGAAGGAAAGAATCTGATAAGAAACTTGTTCTGCAATAGGAAACTTCTAGTTGTGTTGGATGATGTAAGCGAAATAAGCCAACTAGAGAACCTTTCAATAAAGAAAGCATGGTTGGGTTCTGGAAGTAGGGTTATTGTGACAACTAGAAATATGCAAGTACTAATGGTGCATGGAGAATTTGAAACGTACAAGGCTAAATTATTAAATGATGATGAATCTTTTCAACTTCTTTGCAAGAGGGCTTTTAAAAGGGATAGACCTAAAGAAAATTTTTTCAAGTTATGTAAAAGTGTCATCCACTATGCTGAAGGTCTTCCTTTAACTCTTGAAGTCTTAGGTTCTTACTTTTGTGGAAGAAGTGAACTTGAATGGAATGTAGGTTTGGAGAAAATTAAAAAGTTTCCACCAAGAAATATTCTAAAGAGACTTAGAATAAGCTATGATGCATTAGGTGATGTGGAAAAGAAAATATTTTTGGACATTGCATGTTTTTTCAAGGGAATGCTCAAAGATCAAGTTATGCAAATATTTGAAATATGTGGCCTTTATCCATTACTTGCAATAAGAGAACTTGTGGAAAAATGCTTGATAGTTGAATACTATTCTGATTATGGTACTTGTTGTTTGGGTATGCATGATATCCTTCAAGAAATGGGTAAAATTATTGTTTTAGAGCAATCACCCAATGATGCTGGAAAAAGAAGCAGGCTATGGTTAGTAGAAGATATTGATCACATGATGAGAAATAACAAAGGTTCTGATATGGTGGAAGTTATACATCTTCAATCAACTATGCCATATGAGTCTTGA 1674 0.353 MAIISSGTTSISSSMNSNIPPWKYHVFLSFCGKDTRKGFTGHVYAALQQRGIITFVDEELKRGETISDQLSQAIEESLISIVILSPNYASSRWCLDELQKILESRKSLGREVIPIFYKIDPTFVRHQRGTFERAFKKHSERFALNQVKVQKWRDALEEVANICGFDSKNQLETKLIEEITKEIWAKLQPKLPYCFHDELVGINSRIEEVNTLLRIGLVDIHLIGIWGMSGIGKTTLARIIYEKIRHQFDISCFITNVKESYVTNGFVGLQRKLLSKLKIRDLEVDDAYEGKNLIRNLFCNRKLLVVLDDVSEISQLENLSIKKAWLGSGSRVIVTTRNMQVLMVHGEFETYKAKLLNDDESFQLLCKRAFKRDRPKENFFKLCKSVIHYAEGLPLTLEVLGSYFCGRSELEWNVGLEKIKKFPPRNILKRLRISYDALGDVEKKIFLDIACFFKGMLKDQVMQIFEICGLYPLLAIRELVEKCLIVEYYSDYGTCCLGMHDILQEMGKIIVLEQSPNDAGKRSRLWLVEDIDHMMRNNKGSDMVEVIHLQSTMPYES 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1956 557 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 549 IPR044974 GO:0006952
Prci8g1956 557 Gene3D - 189 348 IPR027417 -
Prci8g1956 557 PRINTS Disease resistance protein signature 390 404 - -
Prci8g1956 557 PRINTS Disease resistance protein signature 222 237 - -
Prci8g1956 557 PRINTS Disease resistance protein signature 297 311 - -
Prci8g1956 557 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 165 IPR035897 -
Prci8g1956 557 FunFam Disease resistance protein (TIR-NBS-LRR class) 20 189 - -
Prci8g1956 557 ProSiteProfiles TIR domain profile. 22 187 IPR000157 GO:0007165
Prci8g1956 557 SUPERFAMILY "Winged helix" DNA-binding domain 427 535 IPR036390 -
Prci8g1956 557 SMART till_3 23 162 IPR000157 GO:0007165
Prci8g1956 557 Gene3D - 355 439 IPR042197 -
Prci8g1956 557 Pfam TIR domain 23 202 IPR000157 GO:0007165
Prci8g1956 557 Pfam NB-ARC domain 210 422 IPR002182 GO:0043531
Prci8g1956 557 Gene3D - 19 188 IPR035897 -
Prci8g1956 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 449 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1956 Prci-Chr8 18733454 18765293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1956 24 549 WRKY Transcription Factor Family AT4G12020 28.625 7.87e-54 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1956 - - pcin:129317909 793.882