Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1952 ATGAACTTCATGACAATCCCACCATGGAAGTACCATGTCTTCTTGAGCTTCAGGGGAGAAGACACCCGAAAGGGCTTCACAGACCACTTACACGCTGCTCTCAAACAAAAAGGTATCATAACTTTCAAAGATGATAAGCTCGAGAGAGGAGAGGTTATTTCTCACCAGCTCTTTCAAGCAATTGATGAATCTCTCATCTCTCTTGTTATTCTTTCTGAAACTTATGCTTCTTCGAGTTGGTGTTTGGATGAACTTCTAAGAATTCTTGAATCTAAAAAATCCTTGGGTAGAGAAGTTATCCCAGTCTTCTATAAGATTGATCCATCTGATGTTCGTCGTCAGAGAGGTACCTTTGCTTGTGCCTTTCAAAAACATAGTCAGAGATTTGCTGAAAACAAAGAGAAGGTGCAAAGATGGAGAGAGGCCTTGGAAGAAGTTGCAAATATATCTGGCTACAACTCTACAGATCAGCATGAAGCAAAACTCATTGAAGAAATTATTGCAGAAGTATGGGCAAAGGTACAGCCCAAGTTACCATGTTATTTCAACAATGAGCTCGTTGGCATAGAGTCAAGAGTAGAAGAAGTGAGTGCACTTTTAAAGATTGGATTGTGTGATGTTTGCTTCATAGGAATATGGGGCATGACAGGTATTGGAAAGACAACTCTTGCAAGAATTATCTATGAGAGAATATCTCACCAATTTGACGTTAGTTGTTTTCTTGCTAATGTAAAGGAAAACTCTGATGCCAAGGGTTTAGTTCCCTTGCAAAGAAAACTTCTTTCCCAATTCAAGATAAAAGACATGTATATTGACGATGCATACGATGGAAAGAAGATGATGAGGAATTTGTTATGCAGCAAAAAAGTTCTTGTTGTCTTGGATGATGTAAGTGAAATAAGCCAACTAGAGAACCTTTCTATGAAGAAAGCTTGGCTGGGCCCTGGGAGTAGAGTAATTGTAACAACTAAAGATATGCATGTATTGATAGGGCATGGAGAATTTGAAATTTATAAGGCCACATTCTTAAACAATGATGAATCTCTTCAACTATTATGCAAGAGGGCTTTTAAAAGGGATGAACCTTTGGAAGGTTACTTGAAGTTGTGTAAGAGCATCATCCACCATGCTCAAGGCCTTCCTTTAACTCTTGAAGTGTTGGGTTCTTATCTTTGTGGAAGAACTGAACCTGAATGGAAAGAATCTTTGGAGAAAATTAAAAGGTTTCCGCCAAGCAATATTCAAATGAGGGTTAGAATTAGTTACGATGCATTAAGTGATATGGACAAGAAAACATTTTTAGATCTTGCATGTTTTTTTAAGGGAATGAACAAAGATCAAGTGACAAAAATATTTGAAGTGTGTGGTTTTTTTCCGGTTCTTGGAATAAGAGAACTTGTTGAGAAATGCTTGATAACTGAATATCATTATGACCACGGCACGTGTTTGGGTATGCATGATGTCCTTCAAGAAATGGGCAGAAGTATTGTTTTTGAGGAATCCCCAGGGGATGCTGGCAAAAGAAGTAGGATATGGTCACGAGAAGATATAGATCATGTATTGACTAATAACAAAGGATCTAATTTGATAGAAGTTATACATCTTCAGTCATCTATACCATATGAAGCAAATTGGGATTCTGAAGCATTTTCTAGTATGTGTAGTCTCAGAATACTCATCATCTCATGTAATGTGTACCTTCCTCATGGTCTCACATGTCTTCCTAGTTCATTGAAAATTCTTGAATGGGAAGCATATCCTTTGCAATCTCTTCCACACGGAGTTCATCTGTATCGACTTGTTCTCCTAAAAATGCATCACAGCAAGATCATACACCTTTGGGAGAGAACACAAATGTTAGAAAACTTAAAGTGCATTGATTTGAGATACTCTGAAGATTTCATAAGAACTCCTGATTTTTCTATGATTCCCAATCTTGAGCAACTGGTTCTTGAAGGTTGTGTAAAATTGGTTGAAGTTCACCCATCACTTGGAGAGCATAAGAAACTTGTTGTATTGGACCTGAAAGACTGCAAGAATCTTAAAGCTCTTCCTAGTAAAATGGAAATGGATTCATTAGAGAAATTGATCCTTTCTGGATGCTTAAAAGTTAAAAAGCTTCCAGAGTTTGGGAAAAGTATGAATAGTTTATTGGTTCTTGATGTGAAAAATTGCCAAAACCTTGTTTGTCTTCCAAATTCCACTTGTAATCTGAAATCCCTAAGAATTCTTAATATTTTAGGTTGCTCAAAGTTTTCCTCTTTGCCTCATAATATTGATGGAAATAAGTGTTTAGAGGAGCTTAATTTGAGTGGAACTGCTATACGAGAAATACCTTCATCCATCATTGGCCTACAAAATTTGAAGTCACTATATTTGAAAGGATGTAATGGTCTAAGTTCAACATCCTATTCATTAGGAAACTTGCTTTCCCGAATTCCAAGAGTATTTGGGTTCGTTATTCATGAAGCTCCGACTAGATTGGTGTTTCCTCTTTCAATCTTAGGTCTAGCATCATTGAAGGAATTGGATATAAGTGATTGCAATCTCAAAAAAATTCCAAATGCTCTTAGTTGCTTACCTTCATTGGAGATCCTTGATTTGAGCAAAAATGATTTCGGCAACTTGCCTGATGGCAGTTGCATTCTTCCTTCTTCATTCTCACATCTTTCATCATTGAAGTCTTTGACATTAGATAATTGCAATCTCCGTGATGGGTCAATTCCTGAAAATCTTAGCTTCTTATCATCGTTGCAGAGTCTTAGTGTAAATCAAAACAAATTTACCCATCTTCCTGCTCAATGTGTTGCTAATCTATCACTTCTGTCTCTTCTTCGTTTGAGCTATTGCCCAAATCTCAAATATTTACCAGATCTTCCGCCTAACCTAAAGCAGATAGATACAATTGCTTGTCATTCAATGCAACCTTTATCTTTCTCAGAGTTTGTATCCATTTTGATCAAATCTGGTCTTGATTTTTCAAAATCCTTTCCTTCTAGGATTTCAAATAAAATGGTTTACAAATCCTGGTGGACGTTGGAAAGTGATATCCCATCATGGTTCCATAATCAAAATATCCAATTTCATGATAAAGTTGATGCCTTTCAAGATAATCATGTTCAAATTTCTGAGATAAAAATCTCTTGTCAAGATTTTTGTCCATGTCATCGCATTTTGATTGATGGTTTTGAACCATCAGATTCCATTGTGTCAGTAAAAGTAGACATCTCTCATGTTTGTGGCTCGGGTGTATGGTGGGGAATTTCTCTCTGCATTGTTCTACAAGATCAGGACCTTCCAGTGTCTGGTGAAGATGTGTTCCATCGAAAGCTATTGTTAGCTTATAAATCTTCACATGATGATTTCTTCAAACATAGGGATTCTTGGATGGTTGGGATGGGAAACAATCCACATCAAATGTTAATGACTTATTTTCCTAGCAGTAATTTCATAGTTGATTGTGACCAGATTGAATTCATATTTTATACGCAAAAATATAAGCACAGAGGCAGGGAATCACAATGGGAAGGGAAAGTTGATTTGCAAAATCTGAGCAAGTTTGTGATAAGCAAGTGCGGGTGGCGTGTGATAAGCGAAGAAGATGTTGAAGAATGTCATAGATCAATGAATGAATGCGATACAAGTGGTAATAACAATGAAATCCCTTCTCAACACTCACTTTATGCTTACGGAAAGAGATCCCACCAAGTTGAAGAAGTGGCAGAAGAGGACAACACTGTGGTTAGTGATGAAGCAGAAACATCTTCTGCTAAACGAAGAAAACTCTAA 3789 0.3695 MNFMTIPPWKYHVFLSFRGEDTRKGFTDHLHAALKQKGIITFKDDKLERGEVISHQLFQAIDESLISLVILSETYASSSWCLDELLRILESKKSLGREVIPVFYKIDPSDVRRQRGTFACAFQKHSQRFAENKEKVQRWREALEEVANISGYNSTDQHEAKLIEEIIAEVWAKVQPKLPCYFNNELVGIESRVEEVSALLKIGLCDVCFIGIWGMTGIGKTTLARIIYERISHQFDVSCFLANVKENSDAKGLVPLQRKLLSQFKIKDMYIDDAYDGKKMMRNLLCSKKVLVVLDDVSEISQLENLSMKKAWLGPGSRVIVTTKDMHVLIGHGEFEIYKATFLNNDESLQLLCKRAFKRDEPLEGYLKLCKSIIHHAQGLPLTLEVLGSYLCGRTEPEWKESLEKIKRFPPSNIQMRVRISYDALSDMDKKTFLDLACFFKGMNKDQVTKIFEVCGFFPVLGIRELVEKCLITEYHYDHGTCLGMHDVLQEMGRSIVFEESPGDAGKRSRIWSREDIDHVLTNNKGSNLIEVIHLQSSIPYEANWDSEAFSSMCSLRILIISCNVYLPHGLTCLPSSLKILEWEAYPLQSLPHGVHLYRLVLLKMHHSKIIHLWERTQMLENLKCIDLRYSEDFIRTPDFSMIPNLEQLVLEGCVKLVEVHPSLGEHKKLVVLDLKDCKNLKALPSKMEMDSLEKLILSGCLKVKKLPEFGKSMNSLLVLDVKNCQNLVCLPNSTCNLKSLRILNILGCSKFSSLPHNIDGNKCLEELNLSGTAIREIPSSIIGLQNLKSLYLKGCNGLSSTSYSLGNLLSRIPRVFGFVIHEAPTRLVFPLSILGLASLKELDISDCNLKKIPNALSCLPSLEILDLSKNDFGNLPDGSCILPSSFSHLSSLKSLTLDNCNLRDGSIPENLSFLSSLQSLSVNQNKFTHLPAQCVANLSLLSLLRLSYCPNLKYLPDLPPNLKQIDTIACHSMQPLSFSEFVSILIKSGLDFSKSFPSRISNKMVYKSWWTLESDIPSWFHNQNIQFHDKVDAFQDNHVQISEIKISCQDFCPCHRILIDGFEPSDSIVSVKVDISHVCGSGVWWGISLCIVLQDQDLPVSGEDVFHRKLLLAYKSSHDDFFKHRDSWMVGMGNNPHQMLMTYFPSSNFIVDCDQIEFIFYTQKYKHRGRESQWEGKVDLQNLSKFVISKCGWRVISEEDVEECHRSMNECDTSGNNNEIPSQHSLYAYGKRSHQVEEVAEEDNTVVSDEAETSSAKRRKL 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1952 1262 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 436 IPR027417 -
Prci8g1952 1262 Gene3D Ribonuclease Inhibitor 527 706 IPR032675 -
Prci8g1952 1262 SMART LRR_typ_2 763 785 IPR003591 -
Prci8g1952 1262 SMART LRR_typ_2 890 914 IPR003591 -
Prci8g1952 1262 SMART LRR_typ_2 837 859 IPR003591 -
Prci8g1952 1262 SMART LRR_typ_2 915 938 IPR003591 -
Prci8g1952 1262 SMART LRR_typ_2 860 883 IPR003591 -
Prci8g1952 1262 SUPERFAMILY L domain-like 485 877 - -
Prci8g1952 1262 SUPERFAMILY L domain-like 830 987 - -
Prci8g1952 1262 MobiDBLite consensus disorder prediction 1239 1262 - -
Prci8g1952 1262 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 176 - -
Prci8g1952 1262 SMART till_3 10 149 IPR000157 GO:0007165
Prci8g1952 1262 Gene3D Ribonuclease Inhibitor 707 818 IPR032675 -
Prci8g1952 1262 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 709 IPR044974 GO:0006952
Prci8g1952 1262 PRINTS Disease resistance protein signature 209 224 - -
Prci8g1952 1262 PRINTS Disease resistance protein signature 712 728 - -
Prci8g1952 1262 PRINTS Disease resistance protein signature 377 391 - -
Prci8g1952 1262 PRINTS Disease resistance protein signature 284 298 - -
Prci8g1952 1262 Pfam NB-ARC domain 192 423 IPR002182 GO:0043531
Prci8g1952 1262 Gene3D - 8 174 IPR035897 -
Prci8g1952 1262 Pfam Leucine rich repeat 834 873 IPR001611 GO:0005515
Prci8g1952 1262 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Prci8g1952 1262 Pfam TIR domain 10 179 IPR000157 GO:0007165
Prci8g1952 1262 Gene3D - 175 333 IPR027417 -
Prci8g1952 1262 ProSiteProfiles TIR domain profile. 9 178 IPR000157 GO:0007165
Prci8g1952 1262 Gene3D Ribonuclease Inhibitor 824 1049 IPR032675 -
Prci8g1952 1262 Gene3D - 342 426 IPR042197 -
Prci8g1952 1262 ProSiteProfiles Leucine-rich repeat profile. 839 861 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1952 Prci-Chr8 18649701 18656590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1952 690 896 WRKY Transcription Factor Family AT4G12020 27.273 1.60e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1952 - - pcin:129317909 2496.46