Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1894 ATGGCGCTTGATGTTAATGGAGTTGGGTGTTCTTCAAGCTCTTATGGATCAACTAAGAGACGGAAATATGATGTGTTTTTGAGTTTTCGAGGTGAAGATACTCGCACAATCTTTACTGATCATTTATATGATGCTTTAAGACGCAAAGCATTAAGAACTTTCAGGGATGAAGAAGGACTTGAAAGGGGACAATATATCAATACAAGTTTACTACAAGCAATTGAAGAATCTCGTTCTGCAATTGTTGTGCTCTCCCCAGGATATGCTTCTTCAACATGGTGTTTGGATGAACTCCAAAAGATTCTTCTCAAAAACGAGTTGGGCCTTCAAGTATTTCCAATCTTTTATCGTGTAGATCCATCTGATGTTAGGAAACAAAAGGGAACTTTGCATGAAACAGAATTCATTGAAAGCATTGCAAAAGAAATGAAGTCTAAGTTACATGATGAATCGCCATTTGATCTTGGTGCATTAGTTGGAATTGAATCAAAATTAGATGAGTTGGAGTCACTCATAGCAATTGATTCGGAAGGGGTTCGATCTATAGGAATATGGGGAACAGGAGGCTTAGGTAAAACTACTCTTGCTAGAGCTTTTTATGACTGGAAGTGCAAGGATTTTGAGGATAGAAAAATTCTACTAGTCCTTGATGATGTGAGTGATATAGGCCAACTAGAATATTTGGCTCGAGAGCAAGGATGGTTTGGCAATGGGAGTAGAATAATATTAACAACAAGAGACATGCATTTGTTATCATTATATGATGTATCTGCTCAGTATGACATCGAATTCTTGAGTGGTGACCAATCCCTTCAACTTTTCCGTCAAAATGCTTTTAAGGGAAAAAATCAACCAAATGAAGGTTACTTGGTTCTTTCTAAAAATGTGATAGAATATGCTGGAGGCCTTCCTTTGGTTCTGAAAGTGTTAGGTTCACTTCTTTGTGGAAGAACTATAGAGGAATGGGAGGATGCACTTGCCAAGTTTAAGAAGGTTCCTCCAAAGGACATATTGAAGATACTTAATGTGTGTTTTGACAGATTAGATGATAAGGAAAAGACTATATTCTTGGATATTGCTTGTTTTTTCAATGGGATGGACAAAGATCGTGTCACACAAATTTTAGAAACTTTTGATGAAGATCTTTACCCAAAAATTGGAATAACAATTCTTATTGAGAAATCACTAGTAATCAATCGTGAAGGGCGTTTATGGGTGCATCATATTCTTCAAGATATGGGTAAATATATTGTCCTCCAAGAATCATTTGATAAGCGTTCTAGGATAATGTCTTTGAAGGATGCCAATGATGTACTAAAATCAAATAAGGGGACAGGAGCAATTCGAGGTATAGCTCTATCATTAGAAAAATCATCAGATGCACTTTGGGATCCTGAAGCCTTCTCAAAAATGAGTAATCTCAAGTTACTTATCATTTCAAGTTGCTCATCACATGTTTCTTGTTGCCAATTGAATCTTCCTCGTGGACTTAAATCTCTTCCCAATGAATTGAGAGTCTTTGAATGGGAGGGGTATCCTTTAGATTCTCTGCCCAGACATACTCAACTTGATAAACTTGTTCATCTAAAAATGCGACATAGCAAGTTAAAACAACTTTGGAGAGGAACACAGTCTCTACAAAGGCTAATGTCCATTGATTTATCTCATTCCAAATACCTCATCAAAACTCCAAATTTTGATGGAATTCCTAATCTTCAAAGATTGATTCTCAAAGGATGTTCTAACCTTGTTGAAATTCACCAGTCCCTTGGGCAACACAAGAATCTTGTCATTGTTAATTTAAAAGGCTGCACAAAAGTTAAAACCCTTCCAAAAAAATTTGAGATGGATAGCTTACAGGCTTTTGTTCTATCCGGTTGTTCAAAAATTAGAAAACTTCCTGAGTTTGGAAAGGATATGAAATGTCTACCTAAGCTTGATTTAAAGGACACCGCTATATCCAAACTACCTGAATCACTAGGCAATTTGATTGGTCTTGTTGAATTAAATTTGTCAAGCTGCAAAAGTCTGGTTAGCCTTGCAAATAATGATTGTAAATTGATAGCTAGGAAGATTATCACAATTTCTTGTTGGCCAAAGCTATCAAGGATGCCAGAGGATTTGAATGAAAATGGGACTTTGGAAGTGCTTAATTATGTGGGCCGTGGAATTTCTAAAGAGGCACAATCAATTTGTAAGTGCAATGGTCAAGCACATTCTTCAACGTCATGGAGTTACTTTTCCCTTCTCAGGAAGGCATTTGGGCTTCAAAGGCCTTCAAGCTCAATAAATCTTGTCTTGTCCTCTTCTTTTTCGTCCTTGACAGACTTATATTTAGGGTCTTGCAACCTCTATGACGGATCACTTCCTGATGGCATTAGCAGCTTTACATCATTGGCAACATTAAATTTAAGTGGAAACAATTTCATTGACTTACCATCTGGCCTCATTTCCAATCTTTCGAAGCTTCAA 2472 0.3685 MALDVNGVGCSSSSYGSTKRRKYDVFLSFRGEDTRTIFTDHLYDALRRKALRTFRDEEGLERGQYINTSLLQAIEESRSAIVVLSPGYASSTWCLDELQKILHXKNELGLQVFPIFYRVDPSDVRKQKGTLHETEFIESIAKEMKSKLHDESPFDLGALVGIESKLDELESLIAIDSEGVRSIGIWGTGGLGKTTLARAFYDWKCKDFEDRKILLVLDDVSDIGQLEYLAREQGWFGNGSRIILTTRDMHLLSLYDVSAQYDIEFLSGDQSLQLFRQNAFKGKNQPNEGYLVLSKNVIEYAGGLPLVLKVLGSLLCGRTIEEWEDALAKFKKVPPKDILKILNVCFDRLDDKEKTIFLDIACFFNGMDKDRVTQILETFDEDLYPKIGITILIEKSLVINREGRLWVHHILQDMGKYIVLQESFDKRSRIMSLKDANDVLKSNKGTGAIRGIALSLEKSSDALWDPEAFSKMSNLKLLIISSCSSHVSCCQLNLPRGLKSLPNELRVFEWEGYPLDSLPRHTQLDKLVHLKMRHSKLKQLWRGTQSLQRLMSIDLSHSKYLIKTPNFDGIPNLQRLILKGCSNLVEIHQSLGQHKNLVIVNLKGCTKVKTLPKKFEMDSLQAFVLSGCSKIRKLPEFGKDMKCLPKLDLKDTAISKLPESLGNLIGLVELNLSSCKSLVSLANNDCKLIARKIITISCWPKLSRMPEDLNENGTLEVLNYVGRGISKEAQSICKCNGQAHSSTSWSYFSLLRKAFGLQRPSSSINLVLSSSFSSLTDLYLGSCNLYDGSLPDGISSFTSLATLNLSGNNFIDLPSGLISNLSKLQ 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1894 825 ProSiteProfiles TIR domain profile. 21 148 IPR000157 GO:0007165
Prci8g1894 825 SUPERFAMILY "Winged helix" DNA-binding domain 337 441 IPR036390 -
Prci8g1894 825 Gene3D - 207 259 IPR027417 -
Prci8g1894 825 SUPERFAMILY L domain-like 463 825 - -
Prci8g1894 825 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 133 IPR035897 -
Prci8g1894 825 Gene3D Ribonuclease Inhibitor 758 825 IPR032675 -
Prci8g1894 825 Gene3D Ribonuclease Inhibitor 454 616 IPR032675 -
Prci8g1894 825 Gene3D Ribonuclease Inhibitor 617 753 IPR032675 -
Prci8g1894 825 Pfam NB-ARC domain 208 333 IPR002182 GO:0043531
Prci8g1894 825 Gene3D - 8 147 IPR035897 -
Prci8g1894 825 PRINTS Disease resistance protein signature 182 197 - -
Prci8g1894 825 PRINTS Disease resistance protein signature 545 561 - -
Prci8g1894 825 Pfam TIR domain 22 133 IPR000157 GO:0007165
Prci8g1894 825 Gene3D - 148 206 IPR027417 -
Prci8g1894 825 SMART till_3 22 165 IPR000157 GO:0007165
Prci8g1894 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 360 IPR027417 -
Prci8g1894 825 Pfam Leucine Rich Repeat 526 545 IPR011713 -
Prci8g1894 825 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 211 706 IPR044974 GO:0006952
Prci8g1894 825 Gene3D - 265 350 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1894 Prci-Chr8 17192117 17196867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1894 21 707 WRKY Transcription Factor Family AT4G12020 30.167 1.08e-78 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1894 - - pcin:129318967 1434.85