Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1713 ATGCAAATGGCTCTCAACAAGAATCTTGATGGTGCTGATGCTATACTTGTGGGTGGTCTACCTGATTACATTACAGAAACACAGATCAGGGAATTTCTTGAGACTTTTGGTCCACTTCGTGGCTTTGAATTGGTGAAAGATAGAGATACTCGAGCATGCTGTGTATATCAAGATCCTGCAGTTACAGATATTGTTTGTGTTGCTCTGAATGGAATAAAATCTGGAGATAAGACTCTTACTGTTAGACGAGCTTATCAAGCTGAAAACCAGCCAAAACCTGCACTACAGAGAGTCATGTTTCCACAAGAATTAGCGGCAACGAAGCCGAAGGTTGCTAGTTTAAGCCAGGGTATATCTGCTGCTGCTGATGGACTTGATGGTCCTGACCGTTTATTTGTGGGTGGTATTCCTGATTACTTTAGAGAAGCAGAGATCAGGACATTTCTAGAGACTTTTGGTCCACTTCGGGGCTTTGAATTGGTGAAAGATAGAGATACAGGAATTTCAAAGGGTTATGCATTCTGTGCTTATCAAGATCCTGTGGTAACAGATATTGCTTGTGCTGCTATGAATGGAATAAAATTTGGAGACAAGACGCTCATACTTAGACGAGCGCCAAAACCTGAGCAAGAAGGCAGATTAACTCATGCACTACAGAGACTCACGCTTCAGCCAGAATCAGTGGCAACGAAGGTTGTTCGTATAAGTCAGGCTATATCTACTACTGATCTGAAAGATGATAAGGACTATGAAGATATTGTAGATGATATGAGAAGAGAGGGATCCAAATATGGTACTTTGGTTAATGTGGTGATACCTCGGCCCCGACCCAATTGGGAACCATCACCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTGGGTGGTGCAACAATGGCACAAGCTCAGTTGAGTGGACGAAATTATGCAGGGAATCCAATAGTGGCGGAGTTTTATGCTGAGAAAGAATTTGCTAACTTGATTATGAAGCCTAAATTATGA 1008 0.4226 MQMALNKNLDGADAILVGGLPDYITETQIREFLETFGPLRGFELVKDRDTRACCVYQDPAVTDIVCVALNGIKSGDKTLTVRRAYQAENQPKPALQRVMFPQELAATKPKVASLSQGISAAADGLDGPDRLFVGGIPDYFREAEIRTFLETFGPLRGFELVKDRDTGISKGYAFCAYQDPVVTDIACAAMNGIKFGDKTLILRRAPKPEQEGRLTHALQRLTLQPESVATKVVRISQAISTTDLKDDKDYEDIVDDMRREGSKYGTLVNVVIPRPRPNWEPSPPGVGKVFLEYADVGGATMAQAQLSGRNYAGNPIVAEFYAEKEFANLIMKPKL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1713 335 CDD RRM3_U2AF65 230 319 - -
Prci8g1713 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 86 IPR000504 GO:0003723
Prci8g1713 335 CDD RRM2_U2AF65 129 205 - -
Prci8g1713 335 Gene3D - 227 329 IPR012677 -
Prci8g1713 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 200 IPR000504 GO:0003723
Prci8g1713 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 79 IPR000504 GO:0003723
Prci8g1713 335 Gene3D - 7 81 IPR012677 -
Prci8g1713 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Prci8g1713 335 FunFam U2 snRNP auxiliary factor large subunit 227 331 - -
Prci8g1713 335 Gene3D - 181 200 IPR012677 -
Prci8g1713 335 Gene3D - 9 59 IPR012677 -
Prci8g1713 335 Gene3D - 125 180 IPR012677 -
Prci8g1713 335 PANTHER RNA-BINDING PROTEIN 121 328 - -
Prci8g1713 335 SUPERFAMILY RNA-binding domain, RBD 130 325 IPR035979 GO:0003676
Prci8g1713 335 SMART rrm1_1 232 319 IPR000504 GO:0003723
Prci8g1713 335 SMART rrm1_1 14 82 IPR000504 GO:0003723
Prci8g1713 335 SMART rrm1_1 130 203 IPR000504 GO:0003723
Prci8g1713 335 SUPERFAMILY RNA-binding domain, RBD 15 92 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1713 Prci-Chr8 14204500 14206655 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1713 15 230 Eukaryotic Initiation Factors Gene Family AT1G71770 24.091 6.18e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1713 K12837 - pcin:129317105 348.977