Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1712 ATGCAAATGGCTCTGAACAAGAAGAATCTTGATGGTGCTGATGCTATAATTGTGAGTGGTCTTCCTGACTACATTACAGAAACACAGATGAGGGAATTTCTTGAGACTTTTGGTCCAATTCGGGGCTTTGAATTGGTGAAAGCTAGAGATACTCGAAATTCAGAAAGTTATGCATGCTGTGTATATCAAGATCCTGCAGTTACAGATATTGTTTGTGCTGCTCTGAATGGAATAAAATCTGGAGATAAGACTCTTACTGTTAGACGACCTAATCAAGGTGAAAACCAGCCAAAACCTGCACTAAAGAGAGTTATGTTTCAGCAAGAATTAGCAGCAACGAAGTCGAAGATTGCCAGTTCAAGCCTGGCTATATCTGCTGCTGATGGACTTGATGGTCCTGATTGTTTATTTGTGGGTGGTCTTCCTGATTGCTTGAGAGAATCAGAGATCAGGGCACTTGTAGAGACTTTTGGTCAACTTCGGGGCTTTGAATTGGTGAAAGATAGAGATACAGGAATTTCAAAGGGTTATGCATTCTGTGCTTATCAAGATCCTGTGGTAACGGATATTGCTTGTGCTGCTTTGAATGGAATAAAATTTGGAGATAAGACTCTTATACTTAGAAGAGCGCCAAAACCTGAGCAAGAAAGCAGATTAACTCATGGACTTCAGAGACTCACGCTTCAGCCAGAGCTAGTAGCAACGAAGGTTGTTTGTCTAAGTCAGGCTATATCTGCTGCTGATCTGAAAGATGATGAGGACTATGAAGAGATCGTAGATGATATGAGAAGAGAGGGATCCAAATATGCTACAATTGTATTCACACATCATGAACATCAGGCCTGA 846 0.4102 MQMALNKKNLDGADAIIVSGLPDYITETQMREFLETFGPIRGFELVKARDTRNSESYACCVYQDPAVTDIVCAALNGIKSGDKTLTVRRPNQGENQPKPALKRVMFQQELAATKSKIASSSLAISAADGLDGPDCLFVGGLPDCLRESEIRALVETFGQLRGFELVKDRDTGISKGYAFCAYQDPVVTDIACAALNGIKFGDKTLILRRAPKPEQESRLTHGLQRLTLQPELVATKVVCLSQAISAADLKDDEDYEEIVDDMRREGSKYATIVFTHHEHQA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1712 281 SUPERFAMILY RNA-binding domain, RBD 15 98 IPR035979 GO:0003676
Prci8g1712 281 Gene3D - 231 278 IPR012677 -
Prci8g1712 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Prci8g1712 281 PANTHER RNA-BINDING PROTEIN 126 273 - -
Prci8g1712 281 SUPERFAMILY RNA-binding domain, RBD 131 217 IPR035979 GO:0003676
Prci8g1712 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Prci8g1712 281 Gene3D - 10 65 IPR012677 -
Prci8g1712 281 Gene3D - 130 185 IPR012677 -
Prci8g1712 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 205 IPR000504 GO:0003723
Prci8g1712 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Prci8g1712 281 Gene3D - 6 87 IPR012677 -
Prci8g1712 281 CDD RRM2_U2AF65 136 210 - -
Prci8g1712 281 SMART rrm1_1 15 88 IPR000504 GO:0003723
Prci8g1712 281 SMART rrm1_1 135 208 IPR000504 GO:0003723
Prci8g1712 281 Gene3D - 129 205 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1712 Prci-Chr8 14174014 14176660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1712 16 229 Eukaryotic Initiation Factors Gene Family AT1G71770 24.299 9.34e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1712 K12837 - pcin:129317354 302.753