Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1626 ATGGCGCATAGGTTGCTTAGAGACCATGAGGCAGATGGTTGGGAACGATCTGATTTCCCTATTATCTGCGAATCATGTCTGGGTGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGCCAAACATGTAGTAAACTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAATATGGATTACCAGTTCAAGTCCGAGACACTGCTCTCAGCATTAGCTCCCATGATGCTATTCCAAAGAGTGATGTTAATCGGGAGTATTTTGCTGAAGAACATGATCGCAAGACTCGAGCTGGCTTGGATTATGAATCCTCATATGGAAAAGTACGCCCAAATGATACTATTTTGAAGCTTCAAAGGACAACACCATACTACAAAAGAAACCGGGCTCATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTGACTGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCTGTGGCGTTGAAGTTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGCCTCCAGAGGATGAGACCATTAAAACTCTCTATGTTGGTGGGCTTGATGCTAGGGTTAGTGAGCAGGATCTGCGTGATCACTTTTACGCCCACGGTGAAATAGAATCCATCAAGATGGTGCTCCAACGGGCTTGCGCTTTTGTAACCTACACAACCAGAGAAGGTGCAGAAAAAGCAGCAGAAGAGCTCTCCAACAAGCTAGTTATCAAGGGCCTAAGGTTGAAGCTGATGTGGGGCAGACCTCAGACATCTAAACCTGACTCTGAAGGTTCCGATCAAGCGAGGCAGCAGGCATCTGTGGCTCATAGCGGGTTGTTGCCTCGAGCCGTCATATCACAGCAGCAGAACCAGGATCAAACCCAGGGAGTGCATTACTATAACATTCCACCTCCTCCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAAAGAATGGGTGCTGTTATTCCATCCCAAGATGCTGGTCCTCCTGGTGGGGCCGCTGGGACAGGAGAGAACAACAAACCCAGTATGGAGAAGCAGCAAATGCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCACCATCATCAGTATTATCCCCCTCCGGCGTACGGTTATATGCCACCTGTACCTTCTTATCAACAGTACCCGCCACCACCATACAACCCTGGGATGGCTACATCTCAGCCACCACCAGCGGTAAATCAGCCGTATCAGCAAGCTATGCAGCCAGGATCATCTGCTCCCTCAGGGTCTGCACCGGCTGCACTGGCACCGGCAGAAGCAGGAACGTCAACCTCGGCCTCACAGTAG 1473 0.4813 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEPPEDETIKTLYVGGLDARVSEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPDSEGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGVHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDAGPPGGAAGTGENNKPSMEKQQMQHFAHPMMPPPPGQYHHHQYYPPPAYGYMPPVPSYQQYPPPPYNPGMATSQPPPAVNQPYQQAMQPGSSAPSGSAPAALAPAEAGTSTSASQ 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1626 490 MobiDBLite consensus disorder prediction 403 417 - -
Prci8g1626 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Prci8g1626 490 MobiDBLite consensus disorder prediction 448 470 - -
Prci8g1626 490 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Prci8g1626 490 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 382 IPR039171 GO:0003723
Prci8g1626 490 SMART rrm1_1 229 297 IPR000504 GO:0003723
Prci8g1626 490 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Prci8g1626 490 MobiDBLite consensus disorder prediction 304 320 - -
Prci8g1626 490 Pfam Torus domain 142 194 IPR032297 -
Prci8g1626 490 MobiDBLite consensus disorder prediction 434 490 - -
Prci8g1626 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Prci8g1626 490 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Prci8g1626 490 Gene3D - 149 210 - -
Prci8g1626 490 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Prci8g1626 490 MobiDBLite consensus disorder prediction 299 321 - -
Prci8g1626 490 MobiDBLite consensus disorder prediction 334 417 - -
Prci8g1626 490 Gene3D - 212 310 IPR012677 -
Prci8g1626 490 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Prci8g1626 490 CDD RRM_RBM22 227 300 - -
Prci8g1626 490 SUPERFAMILY RNA-binding domain, RBD 221 308 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1626 Prci-Chr8 13164045 13168877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1626 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 5.27e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1626 K12872 - gmx:100779917 783.482