Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1570 ATGGGCAACTCCTGCATGAAGCCGGTTGCTCATGTTAATTCTTCCAATTTTTCTGGAAGTACAAAGTCAAGTAAGACACAGCGGAATTACAATTCTTCAGGACAAACAGCTTCTTTGCAAATTTCAGAATCAAATCTTGTCAGACCCATTTCCAATAATCTCAAGTCTTTTAGCTTCAATGATCTAAAGGAAGCCACAAAGAACTTCCGCGAAGAAAATTTTATTGGAGAGGGAGGTTTCGGGCGTGTCTTCAAGGGATGGATTAACACTAACACCTTTGCTCCCACAAAACCAGGGAGTGGGATGGTAGTGGCCATTAAGCAGCTCAAGCCAGAAAGTTTTCAAGGCCACAAGGAATGGCTTGCTGAAGTCAATTATCTAGGGCAGCTTCACCATGAAAATCTCGTGAAACTTATTGGTTATTGTTCGGAGGATAGAAATAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGCTTGGAGAATCATTTATTTAAAAAAGGTGTTCAACCCATATCTTGGGCAACCCGGATGAGTATTGCAGTTGGTGTTGCAAGAGGATTAGCATTCTTGCATAGCCTAGATGCGAATGTCATCTATCGTGATTTAAAGGCGTCTAATGTCCTACTTGATTCAGATTTCAATCCAAAGCTTTCAGATTTTGGTTTGGCCAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCAAGGCTATGCTGCTCCAGAGTACGTAGCAACAGGTCACTTGACTTCGAGAAGTGATGTCTACAGCTTTGGTGTCGTCTTGCTAGAGTTGCTAACCGGGAGACGAGCATTAGAAGATGACAGACCTGGGTCTATAGAAGAAACTCTGGTGGATTGGGCAAAACCTTTCCTGAGTGACAGCCGGCGAGTTTTGAGGATCATGGATACAAGACTAGGTGGCCAATACTCCAAGAAAGGAGCTCAAGCTGCAGCTGCACTTGCATTGCATTGCTTGACCTCAGATCCTAGATACAGACCTCCAATGGTAGATGTTCTTGCTGCATTGGAAGCTCTCAGTTCCTCAAGTTCAACCCCAAGGACACCAAAATCTGAGAGTGAGGATGTTTCAGCCAGGAATTCTAGTTCTAGTCATCCACAAAAGGCAATCAGACATTTAAAGTCTCTATGA 1173 0.4314 MGNSCMKPVAHVNSSNFSGSTKSSKTQRNYNSSGQTASLQISESNLVRPISNNLKSFSFNDLKEATKNFREENFIGEGGFGRVFKGWINTNTFAPTKPGSGMVVAIKQLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSEDRNRLLVYEFMQKGSLENHLFKKGVQPISWATRMSIAVGVARGLAFLHSLDANVIYRDLKASNVLLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTSRSDVYSFGVVLLELLTGRRALEDDRPGSIEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALHCLTSDPRYRPPMVDVLAALEALSSSSSTPRTPKSESEDVSARNSSSSHPQKAIRHLKSL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1570 390 Pfam Protein tyrosine and serine/threonine kinase 73 347 IPR001245 GO:0004672|GO:0006468
Prci8g1570 390 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Prci8g1570 390 FunFam Serine/threonine-protein kinase PBS1 155 368 - -
Prci8g1570 390 PANTHER OS01G0588500 PROTEIN-RELATED 29 353 - -
Prci8g1570 390 MobiDBLite consensus disorder prediction 352 390 - -
Prci8g1570 390 SUPERFAMILY Protein kinase-like (PK-like) 45 357 IPR011009 -
Prci8g1570 390 CDD STKc_IRAK 75 346 - -
Prci8g1570 390 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci8g1570 390 FunFam Serine/threonine-protein kinase BIK1 36 154 - -
Prci8g1570 390 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci8g1570 390 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
Prci8g1570 390 MobiDBLite consensus disorder prediction 12 37 - -
Prci8g1570 390 Gene3D Phosphorylase Kinase; domain 1 44 154 - -
Prci8g1570 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Prci8g1570 390 MobiDBLite consensus disorder prediction 352 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1570 Prci-Chr8 12692716 12697492 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1570 13 379 Glycoside Hydrolase AT3G07070 45.238 2.51e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Prci8g1570 PK_Tyr_Ser-Thr 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1570 - - gmx:102664409 567