LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g1559	ATGGGTTTGAGTGCATTATTGCTTTTGAGATTGGCACTAGTTGCCTTCACCCTTGTAGCAGTGGTAGCAGCACAAGAATCGAAACCAGACTGTGATACTAAGTGCGGGGACGTAACCATCCCATATCCCTTTGGCACAAGGGAAGGCTGCTTCAAAGATGAAGCTTTTCATATAATCTGCGACAAAAAGAAGCAGCAGCAGCAGAATCCGATTCCATATTTAGGAGCAAACAACACTTTCCAAGTCCTCAACATCTCCGGGGATCGTAATGAGCTGCGCGTCTCTGTCCCGGTTCAATCTGGTTGCTATAATCCCAATGAAACAAATTATTGGAGGAAAACTTATTTAACGCCTCACAAGTTTGCCATCTCCAATAAAATGAACAAGTTCATCGTAGTTGGCTGTTACACCGTCTCTTCCCTCTTTGACCGCAAAGAAAATAAGTATAATGGCTGCGAAACGAAATGCACTGATGAGTGGAGATCCGTGACTGTTAAAACTTCCTCTGGCTTTTGTTGCCAGACCCCTTTCGACCGAGCCCTTACAAATTATTCTGTTAGTCTTTTTAATTTCTATGATGGCTCGAACGTTTCTGAGAACTTCGTGCCTTGCAGCTACTCATTTTTTGCAGAGACTAATGAATCTTTCAAGTTTTCGTACAAAGATCTCCAGAGTCTAGGGAAAAGCAACAGATCTACTGTGGTTCTCGATTGGGCTGTTGACAGTAAGAAATCTTGCGGTGGAGCTTGCAAAAGTAAAGAAAGTAGATGCGAAGAATCGGAGAGTATCAGTGGCTACTACGTCTGCAAATGCAAACCAGGGTTCCAAGGAAACCCGTACCTCTCCGATGGTTGCCAAGATGTGGATGAGTGCCTCGACAAATCCTTACATGATTGCATCGATCAGAATCATTGCCACAATTTTGATGGTAGCTACAAATGTGACTCTGGAAAGGAGTGGCTTATCATTAAAATCTCAATAGGTGTTATTATAGCTTTGTTGGTTGCCTTCACACTGCTCTCTGCGTTATGTTGGGCACAAAAGCAAAGAAGTCTGAAACAACTAAAAGAAAGAAATTTTGAGCAAAATGGAGGAAACTTGCTTCTCCAACAATTTTCTCAACGACAAGGATATACTGAAAGGGCCAGGATCTTTACAGAAGAAGAGCTTAAGAATGCCACAAATAACTTTGATGAAAGTAGGATTCTTGGTTGCGGAGGACAAGGCACGGTTTATAAGGGTACGTTGTCAAACAATACACCTGTTGCCATTAAAAAGTCTAGAGTTGGAGGGGATCCCCAAAATATTAAAAGTTTTATCAATGAAGTATTTGTTCTTTCTCAAATCAACCATCGGAATGTGGTCAAACTTTTGGGATGTTGTCTTGAAACTGAAGTGCCTTTATTAGTTTATGAGTTTGTAGACAATGGCACCCTTCTTGACCACCTAAGCCCATCAACAAATGATTGTTCTATTACATGGAAGACTCGACTAAGAATAGCTGTAGAGACTGCAGAGGCCATTTCATATTTACACTCTGCTGCTTCTATTCCAATTATCCATCGAGATATTAAATCTGCCAACATACTATTAGACCATGACAATAGAGCAAAGGTATCTGATTTTGGAGCTTCAAGAATTGTCCATCTTGATGAAGCTCAAGTTGCCACTGTGATCCAAGGAACAATAGGATACTTAGATCCAGAGTACCTCCAAACTGGCCAATTGAATGAAAAGAGTGATGTTTACAGTTTTGGGATTGTGCTTGTGGAACTACTCACTGGAAAAAGAGCATTTAAATTCAATAATGCAATGGCTAATCACTTTGTGTGTTCAATGAGAGAAGACCGCTTGGAAATTCTTGATAAGCGTGTGCTAGACCAAAAGGAGAATGCAAAACAATTGAAGGAAGTAGCCTTATTGGCACAAAGGTGCATTAGAGTTAATGGAGAGGAAAGGCCAACAATGAAGGAAGTAGCAATGGAATTAGAGGGTCTAAGAGCGATGGAAAAAAATCTTCAAGAAAAGGAGAAGGATATGATGGTAGAAGAAAGTGAACACTTACTTGGTCATTTTCCTAATGATGGATATGGGAGTGCTAGTACAAGTATTTCAGTTTCAAGTTATGCTAGAATTCAAAAGCAAATTGCCTTTGAGATTGTAGATGGAGGGCGATGA	2178	0.4059	MGLSALLLLRLALVAFTLVAVVAAQESKPDCDTKCGDVTIPYPFGTREGCFKDEAFHIICDKKKQQQQNPIPYLGANNTFQVLNISGDRNELRVSVPVQSGCYNPNETNYWRKTYLTPHKFAISNKMNKFIVVGCYTVSSLFDRKENKYNGCETKCTDEWRSVTVKTSSGFCCQTPFDRALTNYSVSLFNFYDGSNVSENFVPCSYSFFAETNESFKFSYKDLQSLGKSNRSTVVLDWAVDSKKSCGGACKSKESRCEESESISGYYVCKCKPGFQGNPYLSDGCQDVDECLDKSLHDCIDQNHCHNFDGSYKCDSGKEWLIIKISIGVIIALLVAFTLLSALCWAQKQRSLKQLKERNFEQNGGNLLLQQFSQRQGYTERARIFTEEELKNATNNFDESRILGCGGQGTVYKGTLSNNTPVAIKKSRVGGDPQNIKSFINEVFVLSQINHRNVVKLLGCCLETEVPLLVYEFVDNGTLLDHLSPSTNDCSITWKTRLRIAVETAEAISYLHSAASIPIIHRDIKSANILLDHDNRAKVSDFGASRIVHLDEAQVATVIQGTIGYLDPEYLQTGQLNEKSDVYSFGIVLVELLTGKRAFKFNNAMANHFVCSMREDRLXEILDKRVLDQKENAKQLKEVALLAQRCIRVNGEERPTMKEVAMELEGLRAMEKNLQEKEKDMMVEESEHLLGHFPNDGYGSASTSISVSSYARIQKQIAFEIVDGGR	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g1559	726	ProSiteProfiles	Protein kinase domain profile.	397	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g1559	726	Coils	Coil	657	687	-	-
	Prci8g1559	726	Pfam	Protein kinase domain	398	660	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g1559	726	Coils	Coil	620	639	-	-
	Prci8g1559	726	ProSitePatterns	Calcium-binding EGF-like domain signature.	287	314	IPR018097	GO:0005509
	Prci8g1559	726	SUPERFAMILY	Protein kinase-like (PK-like)	379	664	IPR011009	-
	Prci8g1559	726	Gene3D	Phosphorylase Kinase; domain 1	369	473	-	-
	Prci8g1559	726	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	519	531	IPR008271	GO:0004672\|GO:0006468
	Prci8g1559	726	Gene3D	Transferase(Phosphotransferase) domain 1	474	690	-	-
	Prci8g1559	726	FunFam	Wall-associated receptor kinase 2	367	473	-	-
	Prci8g1559	726	CDD	STKc_IRAK	403	667	-	-
	Prci8g1559	726	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	23	676	IPR045274	GO:0007166
	Prci8g1559	726	FunFam	Wall-associated receptor kinase 2	474	687	-	-
	Prci8g1559	726	Gene3D	Laminin	243	323	-	-
	Prci8g1559	726	CDD	EGF_CA	287	315	-	-
	Prci8g1559	726	Pfam	Wall-associated receptor kinase galacturonan-binding	31	94	IPR025287	GO:0030247
	Prci8g1559	726	SMART	serkin_6	397	667	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci8g1559	726	Pfam	Calcium-binding EGF domain	287	315	IPR001881	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g1559	Prci-Chr8	12495015	12501325	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g1559	8	691	Receptor kinase-like Gene Family	AT1G21230	42.759	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Prci8g1559		Pkinase	4e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g1559	-		-	pcin:129317315	1413.28