Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1558 ATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGTGTAACAGCAGGACAAGTGACATTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAACTCTCAATTCTCTGCGACACTGAAATCGCCCTCTGGGTACCGTCTTCTCTTCCACGAGCAAGGTCTTTGATTATGCTAGCTCAAGATTCCTGCATTCACCTTCAACAAATTGAATATGCTGGTTTCGCATGCTGGTTTAGAATATTGCCCCTTCTTGACCGTGTGATATGCTGGTCCATTTCAATGATATCTGGTCATTGCAGTCACTCATGTGCTTTCAGTGATGCTACGGCTGTTGCTGCTGCTACTGTACATTCCTGGACGGTCTTCCTTGTCTCAAACGAGAATGATCTTTTGTACATTGATGAGGGGATTAATGATTGA 426 0.4343 MTRRKIQIKKIDSVTAGQVTFSKRRKGLFKKAQELSILCDTEIALWVPSSLPRARSLIMLAQDSCIHLQQIEYAGFACWFRILPLLDRVICWSISMISGHCSHSCAFSDATAVAAATVHSWTVFLVSNENDLLYIDEGIND 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1558 141 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 Gene3D - 15 64 IPR036879 GO:0003677|GO:0046983
Prci8g1558 141 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 47 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 PANTHER MADS BOX PROTEIN 3 53 - -
Prci8g1558 141 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 SMART madsneu2 1 63 IPR002100 GO:0003677|GO:0046983
Prci8g1558 141 SUPERFAMILY SRF-like 1 53 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1558 Prci-Chr8 12438126 12439203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1558 1 50 MADS-box Gene Family AT2G22540 70.000 2.25e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci8g1558 SRF-TF 5.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1558 - - pcin:129317316 273.478