Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1517 ATGTCAAGTGGAGCAACGCACTGGTGTTATGAGTGCAGACGGACAATCATACCTGAAGGAAGAGATTTCACCTGCCCTTATTGTGGTGGAGGCTTTGTGATAGAACTTGATGAGATGCAAAGATCGGGAAATCTGGAAGATTTTCATGAAGTACCCGATATTATTGGTGCTATTCATGCAGTTATGGGGAGGGGATACCCCGAAAGAAGATTTCTTGATTCAATTGATAGTCTCCTGGGGCAGAGAACGGCTGGACGATACCCAAACTTTGATGTTAGGGGGAGATCTATATCTGCCATGGGTCCTGATCAGAGTTGGGGTTTTATTAGTTCTGGTCCTTTCGTGATACTTCATGGTCATGTTCCTGGATTTACTTTGACTAATGGCATCCCTAGAGCTGGTCCTAGGCGTGTTGACGTTAGTGATTACTTTATGGGGTCTGGACTGGAAGAACTTATTGAACAGCTGACCACAAATGACCGGCATGGTCCAGCCCCGGCCTCACGTTCTTCAATTGATGCAATGCCTATCGTAACAATCACACCAGCCCATCTTCGTTCTGATTCTCACTGCCCAGTTTGTCAGGACAAATTTGAACTTGGTTCTGAGGCTAGGGCAATGCCATGCAGTCATATTTATCATTCAGATTGTATTGTTCCTTGGTTGGTTCAACATAACTCGTGCCCTGTTTGCCGTGTCGAGTTGCCACCTCATGGGCAAGTTGGTCGTCATGCCAGTCGTAACACAGGAGGAAGTAATGCAGAAAGCACCAATAATGATAGCCTTAGGGAGAGAGAGCAAAGCCAGCAGAACCAAGGAAGGAGAAATCCGTTTTCATTTTTGTGGCCATTCCGTTCTTCTAGCTCTAACAGTAATCAATATGCCGAGACAAGAGGTGGCAACTCTTCAAACAGTCGTGACCAGAATAATGGAACAAACTATAGCCGATGGCGCTTTGATGAATGA 966 0.4565 MSSGATHWCYECRRTIIPEGRDFTCPYCGGGFVIELDEMQRSGNLEDFHEVPDIIGAIHAVMGRGYPERRFLDSIDSLLGQRTAGRYPNFDVRGRSISAMGPDQSWGFISSGPFVILHGHVPGFTLTNGIPRAGPRRVDVSDYFMGSGLEELIEQLTTNDRHGPAPASRSSIDAMPIVTITPAHLRSDSHCPVCQDKFELGSEARAMPCSHIYHSDCIVPWLVQHNSCPVCRVELPPHGQVGRHASRNTGGSNAESTNNDSLREREQSQQNQGRRNPFSFLWPFRSSSSNSNQYAETRGGNSSNSRDQNNGTNYSRWRFDE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1517 321 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Prci8g1517 321 MobiDBLite consensus disorder prediction 242 321 - -
Prci8g1517 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 238 IPR013083 -
Prci8g1517 321 MobiDBLite consensus disorder prediction 271 321 - -
Prci8g1517 321 CDD RING-H2_RNF126-like 191 232 - -
Prci8g1517 321 SMART ring_2 191 231 IPR001841 -
Prci8g1517 321 Pfam Ring finger domain 190 232 IPR001841 -
Prci8g1517 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 148 236 - -
Prci8g1517 321 SUPERFAMILY RING/U-box 171 238 - -
Prci8g1517 321 Pfam zinc-ribbon 6 35 IPR039525 GO:0061630
Prci8g1517 321 FunFam E3 ubiquitin-protein ligase RING1-like 155 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1517 Prci-Chr8 12252964 12255679 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1517 135 249 C3H Transcription Factor Family AT5G01980 41.026 2.93e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1517 K11982 - gmx:100813674 454.521