Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1394 ATGCTTCATAGTAGCAGGTGGGATGGATCATGGAATATCCCTTTACCAGGGAAAGGCCATGGATCATTGGGAAGTGAAAGAATCATGGACAATAGGGAGACGCCTATTGAGAGGTATTCGTATATATCTTCAGTTGTGGCTACCGCAAGGAGGTTGCCTTCTGATTCTGGCGCTTTTGCTGATTGGGTAGCTTCTTCTGCCGGCCGTGCTGTCCCCGCCGACGAGCTCTCCCTCGGCTTCAATGCCGGACCTGCCGCTGCTGCGGCCGGGGGAACCGCCGCAGGTCCCACCTCAGGAATGTGGTCTGGTGCTGCCGCGAGGTCAGTCAATTACGGTCTCTCGCCGGAGATGGGAGGCATGCTCGGCCTCCGCGATCTCTATGTCGTCGCGCCGGCGTCGTCATTTCACCACCACCACCACCACCACCACCATGACCAGTCTGTCATGACCGATCCTCATTCGGTTAACAGCTCGAACCCCGCGACTGCGCTCGGCGTCGGTGTTATTCCTCTTCTCACCTCCACGCCTTGTCTCGGCCCATCTAACATCAGCGCCGAGAACGAGACATTGATGAGTAATCGAAGCCGAGGTGGCGCAATTCAGCTGTGGCAAGACCAGGAGTCCGAGCATGGTCATTATTTGAAGAAACAAGGTACGATGATGTTTGAGCTCAACGACAGTGCTGGAAATCTGGTTCGGGACGACAATGGATTGACCGCCTCCGCCACGAACAGTGGTGGAACGACGTGCCAGGATTGTGGCAACCAAGCGAAGAAGGATTGTACTTACAGGAGGTGCAGGACTTGCTGCAAAAGTCGGAATTACGACTGCCCTACTCACGTGAAGAGCACGTGGGTGCCGGAGTCTCGACGGAGGGAACGCCGCCTGATGGCTGCTGCCGCTGGGGCAGCGACGGCTGGTGGATCCATCGGGGCTACCTCTGGTTCCAAGAAACCTAGACTTGTCACATCACAACAACAAACCACAGCAAACTCTCACACTTCCACATCTAATACCACTCCTCCTAGAAGCTTCGATACTAGCTCAAGCCATCAAGATGCGGGTTTTAAGGAATCACTGCCGGGTCAAGTCCGAGCTCCGGCGGTGTTCAAGTGTGTTCGGGTGACGGCGGTGGACGATGCCGGCCAGGACGAGTTTGCCTATCAGACGACTGTGAAGATTTGCGGCCATGTATTCAAAGGGTTTCTGTATGACCAAGGGGTTGAAAGTAGACATGTGTATCCAAATTTATCGGAGCTTCATCTTGGCGGCGCTGGCAGCTCCGGCAATGGGAGAAATGGGGCTTCATCTTCATCCCCAATGCTGGATCCCTCTGATGTTTATGCAGCTTCAGGTGGTGGCTTACTTGGAGGAGGATCAACTTATGGTAATCCAATAAATTAA 1404 0.5442 MLHSSRWDGSWNIPLPGKGHGSLGSERIMDNRETPIERYSYISSVVATARRLPSDSGAFADWVASSAGRAVPADELSLGFNAGPAAAAAGGTAAGPTSGMWSGAAARSVNYGLSPEMGGMLGLRDLYVVAPASSFHHHHHHHHHDQSVMTDPHSVNSSNPATALGVGVIPLLTSTPCLGPSNISAENETLMSNRSRGGAIQLWQDQESEHGHYLKKQGTMMFELNDSAGNLVRDDNGLTASATNSGGTTCQDCGNQAKKDCTYRRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAAAAGAATAGGSIGATSGSKKPRLVTSQQQTTANSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDDAGQDEFAYQTTVKICGHVFKGFLYDQGVESRHVYPNLSELHLGGAGSSGNGRNGASSSSPMLDPSDVYAASGGGLLGGGSTYGNPIN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1394 467 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 133 451 IPR007818 GO:0003700|GO:0006355
Prci8g1394 467 MobiDBLite consensus disorder prediction 309 356 - -
Prci8g1394 467 NCBIfam LRP1 C-terminal domain 360 408 IPR006511 -
Prci8g1394 467 Pfam Domain of unknown function (DUF702) 247 409 - -
Prci8g1394 467 NCBIfam putative zinc finger domain, LRP1 type 249 291 IPR006510 -
Prci8g1394 467 MobiDBLite consensus disorder prediction 137 158 - -
Prci8g1394 467 MobiDBLite consensus disorder prediction 296 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1394 Prci-Chr8 10613900 10644355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1394 41 447 C2H2 Transcription Factor Family AT5G12330 48.456 3.27e-99 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Prci8g1394 DUF702 2.6e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1394 - - gmx:100817745 491.115