LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g1391	ATGAAATTAGAACTTGCTGAGGAGTTGGGCTTGACAGAAAAACAAGTATCTGGATGGTTTTGCCATCGAAGGCTAAAAGATAAAAGATTGTTGAAAGATGAAGCTTGTGCTAATGGGCGACAAGATATTTTAAGTGGAGTCATCCAAGATCATGTCAGTGGGCTAGGGCAAGATTCATGTGGAAGCACCAAACATGGTGATTATAGGCATCTTGATCCCAAAGAGGTTGAAAGTCATGGCCTTCATGTGGGTCATGACCTTTTAGTTTCAGATGTGGCCTATGAACGTAGAAATCATTATTCAGAAAATGTTTGTGCAGTGGATGACACAGCATCTGAGAGCAGCTCATCTTTGCAAGATCAGGATCCCTATGATGCTGAGCATTCTGGGTATCTAACACCTAAAGGAGCTCTGCCAACTAAAAGTCCCAAGTCTGCCTCAAACATGAGATATAAACCATCAGGCTATCTTAAAGTAAAAGGGGAGATAGAAAACCCTGTCATAACTGCTGTTAAGAAGCAATTAGGAAGAAATTACCAAGAAGATGGTCCGCTACTTGGTATAGACTTTGATCCGCTTCCTCCAGGTGCATTTGAAAGTAAAATCGTGGATCTATTTCATGAAACATACTACATGGCAAATCGTGGTCTTCACTCTCCTGAAATTTCTGCTGTGAAAAGGCAACCCAGTCTTTCTGCTAGATATGATTTGTATAATACCAATTTCAATCCCCAAGATTCACACATGGAAGGAGCAGACCTCTCTGATTTCCAGGATAAGAAATCTCGCCAGCTTTCAAAGCAAAGGCCACCTTTGTACAGTCATACCTTTCGATTTCCTAACAGAAATTCTCTGGATTTGTACGAACGCTCTGTTGGAGAAGCAACTGCATATAATAGCAAAGAGAATCATAGAGTTGGCATCAAGCTTGGCCTTGAAGGGTTGAAATCTGATTCTGCAAGTTACCATAGTGATCACTATGATGGTAAACTTGCAGCAAACCCAAAAGACTCACTGTTGCATGGCTATGATAATGTCAATTCAAAGAATGTACTCAGTGAACATGTAACACTTAAGCCTTCAAGCTTGATCAGGAATCCTTATGTTTCTATGGATACTAAGGATAGAGGAGGCCTATCCAGTAGGATGATAAAGGAAAAGAAGTCTAGTGAAAAAATAAAGGCAAGAAAACAATGTGATAATCCAAATGGACTAAGGATGCTTTCGCATGAGGCTGCAAAACGTCGTGTTGATCCACCTCAACAATACAATGTTAAAGAAGAATTTGTTGCCGAGATGCAACTGCATAAAAGTCAGAGATCTGCCATGGAGGTGTCATCTAGCTTCAGTGAGGATGAAACTGCCAATCTCAGCTCGTCTCTCGATGAAGCAATCGGTTGCCATTAA	1407	0.408	MKLELAEELGLTEKQVSGWFCHRRLKDKRLLKDEACANGRQDILSGVIQDHVSGLGQDSCGSTKHGDYRHLDPKEVESHGLHVGHDLLVSDVAYERRNHYSENVCAVDDTASESSSSLQDQDPYDAEHSGYLTPKGALPTKSPKSASNMRYKPSGYLKVKGEIENPVITAVKKQLGRNYQEDGPLLGIDFDPLPPGAFESKIVDLFHETYYMANRGLHSPEISAVKRQPSLSARYDLYNTNFNPQDSHMEGADLSDFQDKKSRQLSKQRPPLYSHTFRFPNRNSLDLYERSVGEATAYNSKENHRVGIKLGLEGLKSDSASYHSDHYDGKLAANPKDSLLHGYDNVNSKNVLSEHVTLKPSSLIRNPYVSMDTKDRGGLSSRMIKEKKSSEKIKARKQCDNPNGLRMLSHEAAKRRVDPPQQYNVKEEFVAEMQLHKSQRSAMEVSSSFSEDETANLSSSLDEAIGCH	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g1391	468	ProSiteProfiles	'Homeobox' domain profile.	1	30	IPR001356	GO:0003677
	Prci8g1391	468	SUPERFAMILY	Homeodomain-like	2	38	IPR009057	-
	Prci8g1391	468	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN	1	462	-	-
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	105	123	-	-
	Prci8g1391	468	CDD	homeodomain	1	29	IPR001356	GO:0003677
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	374	393	-	-
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	442	468	-	-
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	105	149	-	-
	Prci8g1391	468	Gene3D	-	1	37	-	-
	Prci8g1391	468	Pfam	Homeodomain	3	29	IPR001356	GO:0003677
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	442	461	-	-
	Prci8g1391	468	MobiDBLite	consensus disorder prediction	378	393	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g1391	Prci-Chr8	10566092	10571448	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g1391	1	462	Homeobox Transcription Factor Family	AT4G03250	35.861	2.42e-58	198

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Prci8g1391		Homeodomain	4.8e-07	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g1391	-		-	gmx:100805913	538.88