Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1389 ATGTCACGGACTGATAGAATGGCTACGGATCTCAACAGAGCTGGTCCCGTGGAAAGAGACATTGAGCAGGCCATTACTGCATTGAAAAAGGGGGCTTGCTTGCTGAAGTACGGAAGAAGGGGGAAGCCCAAGTTTTGCCAGATTCGGCTATCCAACGATGAATCTGCTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTAAGTCATATTTCTAGAATTATATCTGGACAACGTACACCAATCTTCCAAAGATATCCACGGCCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTAGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCACTAATATCACGTTGCCATCATCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCAGAGGCTAACAGCCCCAGAACATACACTAGAAGAAGTTCCCCATTGAATTCTCCATTTGGTAGCAACGAAAGCTTGCAAAAGGACAGTGGGGATCAGCTTCGCCTTCATAGTCCCTTTGAAAGCCCCCCTAAGAATGGTTTGGACAAAGCTTTGTCTGATGTGATATTGTATTCTGTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTACTAGTGGTTCAGTCCACTCAGTGTCATCAGGAGGATCAGATAGTATACATGGTCACATGAAAGCAATGGGCATGGATGCTTTTAGAGTAAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAGGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGTGAAAGCACTGGTGATGGTGTTTTGGGTGGTGGGACTCACCATCTTGGAGGAAAAATGGATTCTCTATTGCCCAAGGCCTTGGAATCTGCAGTAGTACTTGATGTACAGAATATTGCTTGTGGCGGACAACATGCTGCCTTGGTAACCAAGCAAGGAGAAATTTTCTCTTGGGGGGAGGAATTAGGAGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGAATCTTTGAGTAATACCAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTGACTCTGTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTTTGGTCTTTTGGGGCATGGAAATCAAGTAAGCCACTGGGTCCCAAAAAAAGTGAATGGGCCCTTGGATGGCATACATGTTTCTTCTATCTCTTGTGGTCCATGGCACACTGCAGTTGTTACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGCACATTTGGCGTTCTGGGTCACGGGGACAGAAAAGGTGTTACAATACCGAGGGAAGTAGAGTCCCTTAAGGGTCTTCGTACTGTGCGAGCTGCTTGTGGTGTTTGGCATTCTGCGGCAGTTGTAGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGTGACAAAGGTCGACTTGGCCATGGTGACAAGGAAACAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAACCAAACTTTTGTCAAGTTGTGTGTGGACACAGTCTTACTGTTGCACTTACGACCTCGGGCCATGTCTATACCATGGGCAGTCCTGTCTATGGCCAACTAGGAAATCTCCATACTGACGGGAAATCGCCAAAACGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAAGAGGTGTCTTGTGGTGCATTTCACGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGTCGTCTAGGCCACGGGGACATAGAGGATAGAAATACTCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCTGCTATCTGTCTTCATAAGTGGGCATCTGGTGTCGACCAATCCATGTGTTCTGGCTGCCGTCTCCCTTTTAATTTCAAAAGAAAACGTCATAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCTTGCAGCAGCAAGAAGTCTCTCAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGGGTGTGTGATAATTGTTATAATAAACTAAGGAAAACTACTGATGCTGATTCTTCGTCCCATTCTTCTGTGAGCAGAAGAGGAAGTGTCAATCAGGGGCCACTCGAATTTAACGATAACGATGATAAATTTGATTCCAGATCTCGTAATCAGCTTGCTAGGTTTTCTGTAATGCAATCCTCGAAGCAAGTGGAAAGCAGGTCTTCAAAGAAAAACAAGAAATTGGAATTCAATAGTAGTCGTGTCTCACCCATTCCAAATGGAGGTTCCCAGTGGGGGGCATCGAATATTTCTAAATCTGTCAATCCTGTTTTTGGATCATCAAAGAAGTTTTTCTCAGCCTCTGTTCCAGGATCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACATCCTAGTCCACCTCGATCAACAACTCCAACCCCGACACTTGGAGGACTTACCTCCCCAAAGATAGGTGTTGATGATGTTAAGAGGATAAATGATAGCCTTAACCAAGAGATTATTAAATTAAGAGCACAGGTGGAAAATATGACTCGCAAAACTCAACTTCAAGAAGTTGAGTTGGAAAGAGCAACTAAACAGCTGAAGGAAGCCATAGCATATGCTGGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACAAATCAGCTGAAGGACATGTCTGAGAGGCTTCCTGCAGGAGCATCTAGGAACGTGAAATTTCCTTCTGTTGCTTCCTTTGAATCAAGTCCGACTTCTAATGAAGTCATCAATTCTTCTTCTATTGATGGATTAAATATCCAAGCTGCTAGCCTAGAACCAGAGTTGGCGGAATTGAACAGCCAGTCGCTTTCAAATGGCCAGTCACTTTCGAATGGATTAAGCACCTTCAGTAATCGAAGTGCAGGTCACAACAAACACAGCCAATCAGATGCAACGATTAGAAATGGGAGCAGAACAAAGGAAGGTGAGACTCGTGGTGAGGTTGGATGGGTTGAGCAAGATGAGCCTGGAGTATATATTACCTTTATCTCCCTTCCTGGAGGTGTGATAGATCTCAAGAGAGTTCGTTTCAGTCGAAAGCGGTTTAGTGAGAAGCAAGCAGAACAATGGTGGGCCGAGAATCGGGCAAGAGTGTACGAGCAGTACAATGTGCGAGTGTCTGACAAGTCAACCATTGATGAAACAATCTGTAAATGA 3327 0.4403 MSRTDRMATDLNRAGPVERDIEQAITALKKGACLLKYGRRGKPKFCQIRLSNDESALIWFSGKEEKHLKLSHISRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRCHHRKWRTESRSDGFPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDQLRLHSPFESPPKNGLDKALSDVILYSVPPKGFFPPDSTSGSVHSVSSGGSDSIHGHMKAMGMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGESTGDGVLGGGTHHLGGKMDSLLPKALESAVVLDVQNIACGGQHAALVTKQGEIFSWGEELGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNQVSHWVPKKVNGPLDGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKGVTIPREVESLKGLRTVRAACGVWHSAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVAALVEPNFCQVVCGHSLTVALTTSGHVYTMGSPVYGQLGNLHTDGKSPKRVEGKLSKSFVEEVSCGAFHVAVLTSRTEVYTWGKGANGRLGHGDIEDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWASGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTTDADSSSHSSVSRRGSVNQGPLEFNDNDDKFDSRSRNQLARFSVMQSSKQVESRSSKKNKKLEFNSSRVSPIPNGGSQWGASNISKSVNPVFGSSKKFFSASVPGSRIVSRATSPISRHPSPPRSTTPTPTLGGLTSPKIGVDDVKRINDSLNQEIIKLRAQVENMTRKTQLQEVELERATKQLKEAIAYAGEETAKCKAAKEVIKSLTNQLKDMSERLPAGASRNVKFPSVASFESSPTSNEVINSSSIDGLNIQAASLEPELAELNSQSLSNGQSLSNGLSTFSNRSAGHNKHSQSDATIRNGSRTKEGETRGEVGWVEQDEPGVYITFISLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRVSDKSTIDETICK 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1389 1108 MobiDBLite consensus disorder prediction 139 193 - -
Prci8g1389 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 419 429 IPR000408 -
Prci8g1389 1108 Pfam Transcription factor BRX N-terminal domain 914 947 IPR027988 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 725 744 - -
Prci8g1389 1108 Gene3D - 494 664 IPR009091 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 378 432 IPR000408 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 325 IPR000408 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 601 652 IPR000408 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 143 175 - -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 326 377 IPR000408 -
Prci8g1389 1108 Pfam Unstructured region between BRX_N and BRX domain 955 1031 - -
Prci8g1389 1108 FunFam PH, RCC1 and FYVE domains-containing protein 1 487 658 - -
Prci8g1389 1108 Gene3D - 20 137 IPR011993 -
Prci8g1389 1108 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Prci8g1389 1108 CDD FYVE_like_SF 662 715 - -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 758 773 - -
Prci8g1389 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 657 719 IPR017455 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 497 548 IPR000408 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 988 1037 - -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 309 322 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 596 617 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 328 344 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 419 435 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 435 449 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 538 556 IPR000408 -
Prci8g1389 1108 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 988 1025 - -
Prci8g1389 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1092 IPR013591 -
Prci8g1389 1108 SUPERFAMILY PH domain-like 20 128 - -
Prci8g1389 1108 FunFam PH, RCC1 and FYVE domains-containing protein 1 239 486 - -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 377 429 IPR000408 -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 602 649 IPR000408 -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 433 481 IPR000408 -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 326 374 IPR000408 -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 496 545 IPR000408 -
Prci8g1389 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 548 597 IPR000408 -
Prci8g1389 1108 Coils Coil 863 904 - -
Prci8g1389 1108 CDD PH_PLC_plant-like 19 129 - -
Prci8g1389 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 312 322 IPR000408 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 786 802 - -
Prci8g1389 1108 SMART fyve_4 651 720 IPR000306 GO:0046872
Prci8g1389 1108 SMART PH_update 27 131 IPR001849 -
Prci8g1389 1108 Coils Coil 919 939 - -
Prci8g1389 1108 SUPERFAMILY FYVE/PHD zinc finger 654 725 IPR011011 -
Prci8g1389 1108 SUPERFAMILY RCC1/BLIP-II 267 654 IPR009091 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 832 861 - -
Prci8g1389 1108 FunFam Putative E3 ubiquitin-protein ligase HERC1 659 727 - -
Prci8g1389 1108 Gene3D - 218 387 IPR009091 -
Prci8g1389 1108 Gene3D - 388 493 IPR009091 -
Prci8g1389 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 726 IPR013083 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 549 600 IPR000408 -
Prci8g1389 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 433 484 IPR000408 -
Prci8g1389 1108 MobiDBLite consensus disorder prediction 721 802 - -
Prci8g1389 1108 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Prci8g1389 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 938 - -
Prci8g1389 1108 Pfam FYVE zinc finger 653 719 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1389 Prci-Chr8 10542109 10552180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1389 923 1108 Major Intrinsic Protein MIP AT1G31880 32.683 2.35e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1389 - - cave:132163343 1820.44