Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1339 ATGGATCTTGTGCTTGCCACGTGGCAGCATCAGGATGTGGATTTAGATGACACTCTCCATGTGCTTGCAGAATTAGATTTCGTTGGAGCATTTAAGATGGGAAGAACCAAGAACTCGGAGAAGCTTATCCCCTTCGCCTTGAATTCTTCGTCACTTCTTTCTCTTCATCCATGTCGGCATGTCGCTATCGGTCTTCCCGTTAAAAGCTTCTCTCCCATCTTCTCCGTTTCTGCAGTATCACAATTCGTCTCAGTTCAGTTGGGTGGCTCGTCTTCTTTCTTCTACTTCAAATTTCCCGTTTGCTTAGCCATGAATTTTCCTGGTTGGAATTTTGAGAATGATGGCTGTGTCACCAATCAAAAGAAGTTCATGGGGTCGGGCCAAGAACTTGTGGAGCTGATATGGCAAAATGGACAGGTAGTTACGCACAGCCAAACGCAAAGAAAACCAGTTGCGACTTCTATCGACTCGAGACAGTTCCAGAGAGATGATCAATCAACAATCAGGGCTAATGAATCGTATGGGAACTCAAGCCATTTGATTCAAGAAGATGATGCAGTCTCATGGATTCAATATCCACTTGAGGATCCATTGGAACAACAACTCTGTTCAAGCATATTATCTGAACTGCCATCCTCTGGGTTTGAGTCTGACAAGCCAATAAGGCAACTCGAAGAGGGAAAGTATGTCAAATTCGGCCCCTACAGTGCCTGCCATGTGACTACAAGTTCACAAACACCAAATCTAAAGCCCTTTTCTCAGGAATTCTCAGGAAATCCTATGCCTGCTCCAAGAGTTCATTTTCCTGATTCAACGCTGAAAAAAATTAGTCTTGGCGGATCACAAAATGTCGTCAATTTTTCTCAGTTTTCAAAACCCTCCAAAGTAGCCTCAACATCTTCTAATGCACAGTCTGAAGATGAAGGTAATTGTAATCTATTGAAAAACAAAGGTAAAGAGTGCTCGGTCGTGACAGTGGGTTCAAGTCACTGTGGCAGCAACCAAGTTCCTCTAGATCCTGACATAAGCAGGGCATCAAGCAGTGGGGTTTGGACTACTGCTTTGTATTCTGAAACTGAGCCCCAGAAGGATGGTGTCCAGAAATCAATTCCTCAGTGTGAAAAAGGGAAGTCAGAGGTGCTTGAACCAACTTTGAGTTCATCATCAGATGACTCAGGTAGTCTTGCAAAAACATGCTCCTGGTCTGTAAGAAACCACGGCCAAAAAAGGAAAAGGATAGATGCAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGTAGCTCAGGGGACAAGGCCTTGCCGAAGGAACCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGCAACAAGACAGATAAAGCATCAATGTTAGATGAGGCAATCGAGTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCCCCAATGGGCATGGGAATGGCTTCGCCCTCTTTTCCTCCTATTCCAAATCCGGTGCAGTTACCAAGAACATCACTTGATCATTCCATATCTATGGCTCAGACGCCGAACCAGGGTTTGATGCATCAAGCTCCTGTTATGGGTCCTTTTACTTATCAAAATCAGATGCAAAATCAAGCTTTCTCAGAGCAATACGCACGTTATATGGGGTATCAATTTATGCAAAGTGCCTCTCAGCCGATGAATGTATTTAATTATGGATCTCAAGTACAACATAGTCAAACAATGATTCCACCCAGCAGTAGCAGTGAACCCTTGAATGGAGCTGCAAATAATGATGTTAATTTAAGTGGCAAGATGGATATCTTCCCCCGGCAAGTCCTTGTCCTAAAATTCTTCAAGCGTATCTTTATTGATAGCATTATAATTCTAAACTGCAAGCAATGCATAGTGACTGAGACAAATGTTTCTGGCAGATGCTTTACCTTCAATCAACATGGCTCAACATTGACTGGCTGCTAG 2082 0.4337 MDLVLATWQHQDVDLDDTLHVLAELDFVGAFKMGRTKNSEKLIPFALNSSSLLSLHPCRHVAIGLPVKSFSPIFSVSAVSQFVSVQLGGSSSFFYFKFPVCLAMNFPGWNFENDGCVTNQKKFMGSGQELVELIWQNGQVVTHSQTQRKPVATSIDSRQFQRDDQSTIRANESYGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSSILSELPSSGFESDKPIRQLEEGKYVKFGPYSACHVTTSSQTPNLKPFSQEFSGNPMPAPRVHFPDSTLKKISLGGSQNVVNFSQFSKPSKVASTSSNAQSEDEGNCNLLKNKGKECSVVTVGSSHCGSNQVPLDPDISRASSSGVWTTALYSETEPQKDGVQKSIPQCEKGKSEVLEPTLSSSSDDSGSLAKTCSWSVRNHGQKRKRIDAEELEEQSEATEPKSAVENKVAQGTRPCRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSPMGMGMASPSFPPIPNPVQLPRTSLDHSISMAQTPNQGLMHQAPVMGPFTYQNQMQNQAFSEQYARYMGYQFMQSASQPMNVFNYGSQVQHSQTMIPPSSSSEPLNGAANNDVNLSGKMDIFPRQVLVLKFFKRIFIDSIIILNCKQCIVTETNVSGRCFTFNQHGSTLTGC 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1339 693 MobiDBLite consensus disorder prediction 358 439 - -
Prci8g1339 693 Pfam Helix-loop-helix DNA-binding domain 450 496 IPR011598 GO:0046983
Prci8g1339 693 SMART finulus 452 501 IPR011598 GO:0046983
Prci8g1339 693 Gene3D - 442 502 IPR036638 GO:0046983
Prci8g1339 693 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 510 IPR036638 GO:0046983
Prci8g1339 693 MobiDBLite consensus disorder prediction 407 427 - -
Prci8g1339 693 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Prci8g1339 693 MobiDBLite consensus disorder prediction 381 403 - -
Prci8g1339 693 CDD bHLH_AtPIF_like 446 509 IPR047265 -
Prci8g1339 693 PANTHER TRANSCRIPTION FACTOR PIF3 116 612 IPR044273 GO:0003700|GO:0006355
Prci8g1339 693 FunFam Basic helix-loop-helix transcription factor 441 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1339 Prci-Chr8 9343633 9347749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1339 322 608 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 38.558 3.13e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci8g1339 HLH 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1339 K16189 - gmx:100784531 629.017