LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g1320	ATGCCCTCCAAAGTAGCTATGGAAGTATCCAAACGGGTTAAACTAAAAGCCTCTGATAAACCTAACTTGGTACTTAATCTATTTAGGACTTATGGATTCTCAGATGCCCAGATCTCTAAAATTGTGGAAAAGTGTCCACGTGCCCTTTTAGCGAAGCCTGAGGCGACATTTTCGCCGAAGCTAAGCTTTTTCCTGTCTATAGGGTTTTCAAAGTCTGAATTGCCAGAGTTCATCCTATCAGATTGCAAAATCTTATTCCTGAGCTTGACGAAAACTATAATCCCCCGTTACGAGGCCCTTAAGAGCGTACTTGGTGACGATGATCACGCCAGTAGAGCTTTTAAACAATGGGATTGGCACAATAAGGATCCGACGATTTTACTTTCAAACATAGAGGTGTTGAGAGAACATGGAGTGCCTCAGTCTTCTGTCTGTCTGTCGACTAGTTACTCATTATGCAAGGGCTGCGAATATAGATCCGGCAAAACGTTCATCCATGCAGTTTCTGTTTTAGCATTGACAAGCAAATCTACTTGGGAGTCGAAGCTGGATATCTATGAGAGGTGCGGCTTGTCCAGGGATGCCATTCTTTCAGCATTTGGGAGGTTTCCAAATTGCATGATGCTGTCGGAGGATAAAATCACAAGCACAATGAAGTTTCTTGTGGATGACATGAGTTTGTCATTGGTAGATATTGTTAATTGCCCTGTACTTCTTGGCTACAGCTTGGAGCAAAGGATTATTCCTAGATGCTCAGTTTTTAAAATTTTGAAAACTAATAGTTTGATCAAAAGGGACATATCCTTATGTTCCTTGGTAAGCTTTAGTGAAACAAAATTTCTGGAAAAATTTGTGATTCCGTTCCAGGAAAGTGTTCCTCGGCTATTGGACATTTATAAAAGTCGTTCCTGA	912	0.4101	MPSKVAMEVSKRVKLKASDKPNLVLNLFRTYGFSDAQISKIVEKCPRALLAKPEATFSPKLSFFLSIGFSKSELPEFILSDCKILFLSLTKTIIPRYEALKSVLGDDDHASRAFKQWDWHNKDPTILLSNIEVLREHGVPQSSVCLSTSYSLCKGCEYRSGKTFIHAVSVLALTSKSTWESKLDIYERCGLSRDAILSAFGRFPNCMMLSEDKITSTMKFLVDDMSLSLVDIVNCPVLLGYSLEQRIIPRCSVFKILKTNSLIKRDISLCSLVSFSETKFLEKFVIPFQESVPRLLDIYKSRS	303

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g1320	303	Gene3D	Transcription termination factor 3, mitochondrial	3	291	IPR038538	-
	Prci8g1320	303	PANTHER	CGI-12 PROTEIN-RELATED	4	287	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	FunFam	Mitochondrial transcription termination factor-like	155	292	-	-
	Prci8g1320	303	SMART	mt_12	197	228	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	SMART	mt_12	162	192	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	SMART	mt_12	229	263	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	SMART	mt_12	75	107	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	SMART	mt_12	39	70	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	Pfam	mTERF	173	281	IPR003690	GO:0003690\|GO:0006355
	Prci8g1320	303	Pfam	mTERF	25	145	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g1320	Prci-Chr8	9196737	9197919	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Prci8g1320		mTERF	4.6e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g1320	K15031		-	qsa:O6P43_021048	233.802