Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1233 ATGGAGGTTCCGAATCATCTTCAAGCAGCAGAAGCAGAAGCAGGAGGAGGATCGTCGTCTTCGCAGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACGACGAACAGGCAAGTTACTTTCTGTAAGAGACGCAATGGCTTACTCAAGAAGGCTTACGAGTTGTCTGTTCTCTGCGATGCTGAAGTCGCTCTCGTCGTCTTCTCTAGCCGTGGTCGCTTGTACGAGTACGCCAATAACAGTGTTAGAACAACTATTGAAAGGTACAAGAAAGCTTGCGCTGCTTCCACAAACACAGAATCTGTAGCTGAAGCTAATACCCAGTTTTATCAGCAAGAATCATCCAAGCTAAGAAGGCAGATACACGATATTCAGAATCTGAACAGGCACATCCTGGGTGAAGCTCTGAGCTCCTTGAGTCTGAAGGAGCTGAAAAACCTAGAGGGAAGACTGGAGAAAGGTTTGAGCAGAGTTAGATCTAGAAAGCACGAGACATTGTTTGCTGAAGTCGAGTTCATGCAGAAGCGGGAAATGGAGCTCCAAAACCATAATAATTATCTGCGAGCAAAGATAGCCGAACAGGAGAGAGCACAGCAGCAGCAGCAGCAGCAATCAAGTGTGATGCAGCAGCAGCAGCAGATGTGTGAGTCCATTCCCTCACAATCTTATGATCGCAATTTCTTCCCTGTAAATCTCTTGGCTTCCAATAATCATCATCACTATTCTACTCGACAAGACCACACTGCTCTCCAGCTTGTGTAG 774 0.4587 MEVPNHLQAAEAEAGGGSSSSQKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRTTIERYKKACAASTNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQERAQQQQQQQSSVMQQQQQMCESIPSQSYDRNFFPVNLLASNNHHHYSTRQDHTALQLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1233 257 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 Gene3D - 37 130 IPR036879 GO:0003677|GO:0046983
Prci8g1233 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 213 - -
Prci8g1233 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 CDD MADS_MEF2_like 26 100 IPR033896 GO:0000977|GO:0045944
Prci8g1233 257 FunFam agamous-like MADS-box protein AGL11 37 120 - -
Prci8g1233 257 Pfam K-box region 109 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci8g1233 257 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 MobiDBLite consensus disorder prediction 1 31 - -
Prci8g1233 257 Coils Coil 188 208 - -
Prci8g1233 257 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci8g1233 257 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Prci8g1233 257 SUPERFAMILY SRF-like 26 102 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1233 Prci-Chr8 8264299 8271149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1233 13 257 MADS-box Gene Family AT3G58780 69.323 7.20e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci8g1233 K-box 9.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1233 K09264 - gmx:100817239 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g1233 8 8264299 8271149 Prci8g1233 8 8264299 8271149 ECH