Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1181 ATGGCTATCGGTTTCGTATTCGAAGCTCCTAGCGACGAAGAAATCGAGCGCTCTGATTCCGAAGACGAAGAACAGGAGCAAAGCCAAGAAGAAGAAGCAGAAGAGCAAAGTGATTATGACAACGACGACGACGACGACGAAGAGGATGCAGAAGGAAGAACACGAGTTTCGAACAAGAAATCTCAATCCCCGTGGGACTTCGCGAAGTACTCTGAATCCGTCTCGGAGGAACATGCCCGACGAAGCACAACCTCGGTAGATCAGAAAATTGCCAAAGCCATTAAAGAACGTTCCACCCCGCTCAGAAAGCCCGTCGAAGATGACCAGGAGAGCTCCGAGTCCGAACCCGACAAACAAGAGGACTACAAATCAGAAGAGGAAGAAGATGAAGGTGGCAATGCAAGTGAGAGCAAGTCTTTCTTCGCGCCATCTGACGGAGCTTCGTTCCATGCTGATTCATTCATGGAGCTTAATTTGTCGCGTCCTTTGCTCCGGGCTTGTGAGGCCTTAGGATACGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGTCGTGATATATGTGGTAGTGCCATTACCGGTTCGGGGAAGACAGCTGCCTTCTCACTGCCTACTCTGGAGAGGCTTTTGTACCGTCCGAAGCATGTGCAGGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAACTGGCTGTCCAGGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGACATAAGGTGTTGCCTGGTTGTTGGGGGTTTGTCTACAAAGGTGCAAGAGGCAGCCTTGAGATCAATGCCAGATATTGTTGTGGCTACTCCTGGACGCATGATAGATCATTTACGCAATTCCATGTCAGTGGATTTAGATGACCTTGCTGTGCTAATCCTTGATGAGGCTGATCGTCTATTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTTCGCTTGTGTCCCAAGAAAAGGCAGACCATGCTCTTTTCAGCCACCATGACTGAGGAGGTTGATGAACTTATTAAGCTTTCTTTAACGAAACCCTTGCGTCTGTCTGCTGACCCATCTGCAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTAAATCAGGAAGCGGTTCTTCTCACACTCTGTTCCAAAACTTTTACATCTAAAGCGATCATATTCAGTGGAACAAAGCAAGCTGCGCATAGGTTGAAGATTATATTTGGACTAGTTGGTCTGAAAGCTGCTGAACTTCATGGAAATCTCACTCAGGCCCAGCGTCTTGAAGCTCTAGAGCAGTTCAGGAAGCAGCAAGTTGACTTTTTAGTTGCTACTGATGTGGCCGCTCGAGGCCTAGACATCATTGGTGTCCAAACTGTCATCAACTTTGCATGTCCACGGGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACGTTTGTGACTGACAATGACCGCTCACTTTTAAAAGCAATTGCAAAGAGGGTGGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAGCAGTCTGTAGTTAAGTGGTCTCATGCAATTGAGCAAATGGAGGATGACATTGCTGCAATTCTCGAAGAAGAGAGGGAGGAAAGAGCCCTAAGGAAAGCTGAAATGGAAGCAACAAAGGCTGAAAACATGATTGAGCATAGGGAAGAGATATATTCCCGCCCCAAAAGAACTTGGTTTATGACAGAGAAGGAGAAGAAGGTTGCTGCAAAGGCAGCAAAGACTTCTAATGAAAAGGGAAAGAGCTCTGGAAAGGAAGTTATTAGCGCGGACCAAGCTGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGAGAGAAAAAAATTTACCCAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTAGAGGATGAAGGTCATTTTGAGAAGCCAGAAGCTAATGAGAAAAATAAGAAAGAAAAGACTGGAATGTCACTCGTTGACGTGGCATACCGACGGGCAAAAGCAGTTAAAGCTGTGAAGAAGGCTCTAGATTCTGGCAAAATTGTGAAGAAGGGTAAAAAGAAATCGAATCATTCTTCACGAAAGACTCCTTCAAGGACAGATGAGATGCGGGAGCTTTTTCAAACTGATATGAGCGAGAAAAAACAAAAAAGAATTGGTGGACCAGGGAAGAAGTCCAAAAGCTCATTCAAAAGCAAGTCAAGGTATAAGCGCAGGTAG 2271 0.4584 MAIGFVFEAPSDEEIERSDSEDEEQEQSQEEEAEEQSDYDNDDDDDEEDAEGRTRVSNKKSQSPWDFAKYSESVSEEHARRSTTSVDQKIAKAIKERSTPLRKPVEDDQESSESEPDKQEDYKSEEEEDEGGNASESKSFFAPSDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKHVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFNAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLTLCSKTFTSKAIIFSGTKQAAHRLKIIFGLVGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVVKWSHAIEQMEDDIAAILEEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTEKEKKVAAKAAKTSNEKGKSSGKEVISADQAEALRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGHFEKPEANEKNKKEKTGMSLVDVAYRRAKAVKAVKKALDSGKIVKKGKKKSNHSSRKTPSRTDEMRELFQTDMSEKKQKRIGGPGKKSKSSFKSKSRYKRR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1181 756 MobiDBLite consensus disorder prediction 711 736 - -
Prci8g1181 756 Pfam Helicase conserved C-terminal domain 390 492 IPR001650 -
Prci8g1181 756 Gene3D - 372 543 IPR027417 -
Prci8g1181 756 Coils Coil 537 577 - -
Prci8g1181 756 CDD SF2_C_DEAD 369 501 - -
Prci8g1181 756 SMART helicmild6 407 492 IPR001650 -
Prci8g1181 756 Pfam DEAD/DEAH box helicase 176 346 IPR011545 GO:0003676|GO:0005524
Prci8g1181 756 MobiDBLite consensus disorder prediction 1 141 - -
Prci8g1181 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 357 IPR014001 -
Prci8g1181 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 303 311 IPR000629 -
Prci8g1181 756 Coils Coil 616 636 - -
Prci8g1181 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 102 712 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 737 756 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 690 756 - -
Prci8g1181 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 512 IPR027417 -
Prci8g1181 756 MobiDBLite consensus disorder prediction 110 132 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 14 50 - -
Prci8g1181 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Prci8g1181 756 Gene3D - 95 359 IPR027417 -
Prci8g1181 756 MobiDBLite consensus disorder prediction 597 674 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 638 674 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 597 611 - -
Prci8g1181 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 531 IPR001650 -
Prci8g1181 756 SMART ultradead3 171 372 IPR014001 -
Prci8g1181 756 CDD DEADc_DDX27 163 358 - -
Prci8g1181 756 MobiDBLite consensus disorder prediction 71 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1181 Prci-Chr8 7916544 7925706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1181 140 509 Eukaryotic Initiation Factors Gene Family AT3G13920 33.780 2.67e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1181 K13181 - gmx:100791233 1016.91