Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1117 ATGGAAGAGAGTAAAGTTGAGGGAGATAGTCATCATTCAGCACCACGGAAGCATTATCATGTGTTCCTCAGTTTCAGAGGAAAAGATACGCGCAGGAGTTTTACTGACCACTTGTATGCTGCGTTGCTACGAAAAGGGATCGTTACTTTTAAGGATGACAAAGAACTTGAGAGAGGACGAGTCATCTCGGAGGAACTCATGAAAGCTATCGAGGGCTCTCTGTTTGCTATTGTGATTTTATCCGAAAACTATTCTTCTTCCTCATGGTGTCTGGATGAGTTGCAGAAGATTGTGGAATTTAAGGAGGATTTTGGCCTCATAGTTTTTCCAGTATTTCATGGCGTCAATCCGTCTGATATACGACACCAGAAAGGAAAAATTGGAAAAGCTTTTGAGAAACATGAAGCCAAATTTGCACAAGACAAAGAAAAGGTGCAGCGATGGAAAAAAGCTTTGACTCTTGTCAGCAACTTTGGTGGCTGGGACACCAATGATCGGCATGAAGCGGATATCATTGAAGAAATCGTTGCAGCATTATGTAGTCGACTGTGTGTTCAGATGCCATCTAAGTTTGATCACTTAGTTGGAATTCAATCCAAGGTAAAAAAGATGATGTCTCTTCTAAGATTAGGTTTAGATGATAAATGCTTCGTTGGCCTATGGGGAATGGGTGGAATTGGTAAAACAGCCCTTGCAAAAGCTGTTTACGAGACAATTAAGTGCAAGTTCAATACTTATTGCTTTCTTGCAAATATCAGGGAGGAATCAGAAAGAATAGGTTTAGTTGGCTTACAAAGGAAACTTCTTTCTCGTGTCCACCAAAACAATATTGAGATCAATGACTCAGACGAAGGAACGGTTGCAATAAGACACTTTTTATCCAATGAAAAAGTTCTTATTGTTCTCGATGATGTGAGTCACATAAATCAACTGGACAATTTGGTCGGAGACAAAGATTGGTTTGGTGATGGAACAAGAATCGTAGTAACTACTAGAGACTTGCACTTATTGGTGTTGCATGGCCAATTCACTGAGTACAAGATTAGAACTTTGAGTAACCGACGCAGCCTTAAGCTCTTGTGTCAAAAAGCGTTTAAAAAGGACGAACCTGAGGAAGGTTATCGAATGTTGTCGGAAAAAATAGTTGAATATTGTGGTGGTCTTCCTTTGGCACTTCAAGTGTCAGGTTGGTTTCTCTGTAAGAGAAGTCAACGTGAATGGAGAGACACGTTGAATATGGTGAAGCAAAATTTGCACAAGGATGTTCTCAAAACACTTCAATCAAGTTATGATGAATTAGAATACGAAGAACACAAAGCAATGTTCTTAGATATTGCTTGTTTCTTCAAAGGAAAAGAAAGAGTTGAAGTGATGAGAATATTAGAAAACTGTGGTCTTCACCCCACAATTGGAATCGACGTCCTTATTGAAAAATCCTTGATAAGCCCCAAGTCCTGGGGCAGTGGCAAAGGTTGTCTACACATGCATGTTCTTCTTGAACAGATGGGAAAGAGCATTGTCATGCAAGAATCTCCAAAAGATGCTTCTAGACGCAGCAGGTTGTGGTCTCGAGAAGAAGCTGATAATGTGTTGAAAGGAAATAATGGAACAGAAGCTATTCAAAGCATAGTCTTGAACTTGGAAGAACCATACATGGCAGATTGGCACCCAGATTGCTTCTCAAATATGAGTAATCTAACATTGCTTTACCTAAGTAATGTGCACATTTTGCATTGTCTGAATTTTCTTCCTAGTTCTCTGAAGGTTCTTATATGGGATAGATATCCTTTGGAAGCTCTGCCACATAATATTAACCAATTAGGTGAACTTGTAGAGCTTACATTGCATCAAAGCAAAATCAAACAACTTTGGAACGGAACACAGTTGTTAGGTAAACTGAAGTTGATCAATCTGAGTTATTCTGAGGATTTGATTCAGACGCCAGATTTCAATGGAGTTCCAAATCTTGAATGCTTGCTTCTTGAAGGTTGTAAGAGCCTATTTATGGTTCATGAATCTCTTGGGCAGCATAAGAAACTGGTAAAGTTGAATTTGAAGGACTGCACAAGCCTGAGAATCCTCCCCAGAAAGTTGGAGATGAATTCTCTGGTGGAGCTTCTTCTTTCTGGATGCTCAAAACTTCAGAAGCTTCCCAAATTTGGAGAAAATATGAAAAATCTGTCCACATGCGATGTGAGTGAGACCAATATAAGAAAAGTACCTTTCTCCATCATTCATCTGACAAATCTCAAAGAGCTATCTCTTCATGGATACAAAGGGCCATATTCCTTCTCACTCTCTGGATTCTCTTCCTTGAAAAAATTGGATTTAAGCTTCTGCAACTTGTGGAATCCATCAATCCCTCATGATCTGCGAGGCTTATCTTCATTGATAGAGTTGGATTTAAGGGGAAACCAGTTCTCTAATCTACCTTCTGACTCCATCTCTAATCTTCTCAACCTTGAACGCCTTTATCTCAGTGACTGTGCGAGGCTTCAATCACTTCCCAAGCTTTCACCAAACTTAATTAGAATATTTGCAAGTTGCTGTCCTTCAATGAAACCCTTAAAAGACATGCAACATCTAGTTTCATCACTTGTCTGCAAGCGTCGTAGTGATCTTCTACATGAGGTAATTTTCTTGCGTGTGCCTGGGGATAAAATCCCAACTTGGTTTAAAGAGAAAGAACATTGTGTACATTATGCTTCTCACGAGTTTGAGGCAAATATAGCTATAAAAGTAGACACTTCTGATAATGATGAGAGGCAATGGTGGGGAATTGCAGTGTGCCTTGTGCTGAGAAAAAGAAAGGCATCATTTTTCTGTATAAGAAGCGATCTACGTTGGGGTTTCAAAGATCCTAACGAAGAAGAAAAACAGGTCAAGAAATCACTGTTTGGGAGTGCAGATTCAAATCCTCATCTCTGTATAGCAATTTTTCCCTTTAATAATTTGAGTTATAGGCAACAATGTCATCTAAGAGGGAAAAGTCAGGCTCAGCTTCAACTACATTTGAGAATTTGTGGAGGTTTGAATGTAGAAGTGCACTGTGGATGGCGCATAATATGTAAGAATGATTTTTTTGAAGGGTAA 3093 0.3935 MEESKVEGDSHHSAPRKHYHVFLSFRGKDTRRSFTDHLYAALLRKGIVTFKDDKELERGRVISEELMKAIEGSLFAIVILSENYSSSSWCLDELQKIVEFKEDFGLIVFPVFHGVNPSDIRHQKGKIGKAFEKHEAKFAQDKEKVQRWKKALTLVSNFGGWDTNDRHEADIIEEIVAALCSRLCVQMPSKFDHLVGIQSKVKKMMSLLRLGLDDKCFVGLWGMGGIGKTALAKAVYETIKCKFNTYCFLANIREESERIGLVGLQRKLLSRVHQNNIEINDSDEGTVAIRHFLSNEKVLIVLDDVSHINQLDNLVGDKDWFGDGTRIVVTTRDLHLLVLHGQFTEYKIRTLSNRRSLKLLCQKAFKKDEPEEGYRMLSEKIVEYCGGLPLALQVSGWFLCKRSQREWRDTLNMVKQNLHKDVLKTLQSSYDELEYEEHKAMFLDIACFFKGKERVEVMRILENCGLHPTIGIDVLIEKSLISPKSWGSGKGCLHMHVLLEQMGKSIVMQESPKDASRRSRLWSREEADNVLKGNNGTEAIQSIVLNLEEPYMADWHPDCFSNMSNLTLLYLSNVHILHCLNFLPSSLKVLIWDRYPLEALPHNINQLGELVELTLHQSKIKQLWNGTQLLGKLKLINLSYSEDLIQTPDFNGVPNLECLLLEGCKSLFMVHESLGQHKKLVKLNLKDCTSLRILPRKLEMNSLVELLLSGCSKLQKLPKFGENMKNLSTCDVSETNIRKVPFSIIHLTNLKELSLHGYKGPYSFSLSGFSSLKKLDLSFCNLWNPSIPHDLRGLSSLIELDLRGNQFSNLPSDSISNLLNLERLYLSDCARLQSLPKLSPNLIRIFASCCPSMKPLKDMQHLVSSLVCKRRSDLLHEVIFLRVPGDKIPTWFKEKEHCVHYASHEFEANIAIKVDTSDNDERQWWGIAVCLVLRKRKASFFCIRSDLRWGFKDPNEEEKQVKKSLFGSADSNPHLCIAIFPFNNLSYRQQCHLRGKSQAQLQLHLRICGGLNVEVHCGWRIICKNDFFEG 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1117 1030 Pfam TIR domain 19 193 IPR000157 GO:0007165
Prci8g1117 1030 SMART LRR_typ_2 607 629 IPR003591 -
Prci8g1117 1030 SMART LRR_typ_2 794 817 IPR003591 -
Prci8g1117 1030 SMART LRR_typ_2 769 793 IPR003591 -
Prci8g1117 1030 Gene3D - 16 185 IPR035897 -
Prci8g1117 1030 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Prci8g1117 1030 Gene3D Ribonuclease Inhibitor 723 868 IPR032675 -
Prci8g1117 1030 SUPERFAMILY "Winged helix" DNA-binding domain 422 532 IPR036390 -
Prci8g1117 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 445 IPR027417 -
Prci8g1117 1030 Gene3D - 350 434 IPR042197 -
Prci8g1117 1030 Gene3D - 186 342 IPR027417 -
Prci8g1117 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 719 IPR044974 GO:0006952
Prci8g1117 1030 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 161 IPR035897 -
Prci8g1117 1030 SMART till_3 18 158 IPR000157 GO:0007165
Prci8g1117 1030 SUPERFAMILY L domain-like 545 857 - -
Prci8g1117 1030 PRINTS Disease resistance protein signature 217 232 - -
Prci8g1117 1030 PRINTS Disease resistance protein signature 698 714 - -
Prci8g1117 1030 PRINTS Disease resistance protein signature 385 399 - -
Prci8g1117 1030 PRINTS Disease resistance protein signature 292 306 - -
Prci8g1117 1030 Gene3D Ribonuclease Inhibitor 528 722 IPR032675 -
Prci8g1117 1030 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 184 - -
Prci8g1117 1030 Pfam NB-ARC domain 210 433 IPR002182 GO:0043531
Prci8g1117 1030 Pfam Leucine Rich Repeat 610 628 IPR011713 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1117 Prci-Chr8 7467398 7471665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1117 17 831 WRKY Transcription Factor Family AT4G12020 31.138 3.49e-90 315