Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1083 ATGGAATTGACGATGGTTGCTGAGGGGACGGAACCGCCGGAGGAGAAGCGATCCGAGGGCCTGCCAGTGAAAAGGCCGATTGAGAATGGTGGGGGTGAGGAATTGGCCAAGAAGCCTAAGGTTGAAGCTGCTGCTGCTGCGTCTAGCGGGGAGTTCAAGAGGGTGGCGGAGATTGTGCTGGTTTTGTCGACTATGGCGGCAATGCGAGGCGGGAAGAAGCCGACTAATGTGGAGATTGAGTTGATGAAGGAGGCGAGGATGAAGTTGGTGGAATTGTGTCAAGGGATGGCTCCCAAGGACATTGTGGCGAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAACGATCAGAGATTAGGGTTTCAAAGTCCAAAGATGTCTATAAGCGAAAGGTTATCGCTCTCTAAGTTGAAGATGGAAGAATCAAAGAAGTTTCCTGAACATTCTACTCCATCTACTTCTCAGCCGTTGCAAACAAGCATGGGCGGAATGTTTCCGTTGGACAAACCAAGCCACACAGGACACTCTGCTTCTGGTACCATAGCTTCTCCTCCTGTGATTCATATTTCTGCAGGATCTTCTGCTGCTTTGCAATATCAATCAACTACTAGTGAAGTAAAACCTTCTATAGTTTCTGGTGGAATGCCTAGTAGTCACTTGGGTAGAAATTCATCTTCATTAGCATTGCCTAAGGTCGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGCTGCATGCTCAGGCGAACTCTTCATTAAACCAACCCTTGGTGAATGCTCCAACATGGTCGATACAAACTCAAACTCAACCTGCCTCATTAGCTAGAAGTACACCAGAAAACAAAGTGACTGGACATAACTCTGTCAAGTTTGAGGGAATGGGTGACCTAACTGGGCCCAGACCAGCTTCACAAATAGCAAGGGATCAGACCTTTAGACCTTTAGTAACTCAAACAGCACCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATTGGTCAGCCTTCTTCACTTTCTAGCAATCACACTGAAATTGCTAAGATTGTCCAGAAACTGTTACAACCAAAGCTTCCTGAGCATCCCACGTGGACTCCTCCATCAAGGGATTATATGAACAAAGCATTTACTTGCCAGATGTGTGATCTCACTGTCAATGAAGTGGATACTGTTCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAATGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGGGGTGAGTGGCATTGCATGAGGTGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCCCCGAACACTCCACCAAAACTGCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAGCTGGAGTTGCAGCTCCAAACGTCAGCTCACAGGAGTTAACAGCAAATGGAGGCTCTGTTTCAACTGATGCTATCAGTAACAATAAAGATGCTGAGCTTCCATCTGTCTCAAAGATCCCTGATACAAAAGAAATGCAAGATAATATTCATTCATCCAGCAGCAAACATATGGATGAGAAGCCTGACCCAAACATCTCAATAAAATCCCTTGGTGCCACTTATGAGCCATCTGTAGGCTTGGCAGGTGAAAGTTCTGCTGAACAAATAATTTCTGAGCCATCTACCTCTAAGGAGAGAACCTTTGCTCCAGAATCAGAAGTGCTTCCTCAATTAACTGAATCAGTTAAGCCTAACAATTTGCAATTGTCCAAAAATGTACAAGTTGAACTGACACCACCATCAAGCAATGTTGAAGTTTCATTATATAAACATGTTGACAATAGTTTGACAGATAATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGATATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACACGCTGAAGGTAGACATTGCACTGCGTTATATTCAGATGGCTTACATGCAGTAGAATGGGTTGGTGATCTTGTACAACTTGTAGAAGAGAAAAGGTTTTACCAATCTTGCCGAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAGTCCAGTCATGGCAAGTTAATTCCATCTAAACTGCGGTCTATGTTTGAAGATAGCAAAACTGGGTTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGCGATAGAACTGAAATGGCTGGCTCCATTCAAGGCCCCTGTGAAGTCCTCCCATCTGATAAATTTCAACAAGAAAACAATAGACGGAGAGAATTAGAACCTGGGGAAAGTGCTAGACTTCGACCAATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2499 0.437 MELTMVAEGTEPPEEKRSEGLPVKRPIENGGGEELAKKPKVEAAAAASSGEFKRVAEIVLVLSTMAAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKINDQRLGFQSPKMSISERLSLSKLKMEESKKFPEHSTPSTSQPLQTSMGGMFPLDKPSHTGHSASGTIASPPVIHISAGSSAALQYQSTTSEVKPSIVSGGMPSSHLGRNSSSLALPKVEQPQFKVDGGSSGPYLLHAQANSSLNQPLVNAPTWSIQTQTQPASLARSTPENKVTGHNSVKFEGMGDLTGPRPASQIARDQTFRPLVTQTAPGNLSSLHQPLQGMNIGQPSSLSSNHTEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSPNTPPKLPSNTGGVQPSLEKKAGVAAPNVSSQELTANGGSVSTDAISNNKDAELPSVSKIPDTKEMQDNIHSSSSKHMDEKPDPNISIKSLGATYEPSVGLAGESSAEQIISEPSTSKERTFAPESEVLPQLTESVKPNNLQLSKNVQVELTPPSSNVEVSLYKHVDNSLTDNNRKESHGGESLIYDIKRDDQYVALANSDKSSGTHAEGRHCTALYSDGLHAVEWVGDLVQLVEEKRFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLRSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSDKFQQENNRRRELEPGESARLRPIFLCRWFYDGVKKLFQPVTS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1083 832 MobiDBLite consensus disorder prediction 146 165 - -
Prci8g1083 832 MobiDBLite consensus disorder prediction 520 539 - -
Prci8g1083 832 MobiDBLite consensus disorder prediction 9 23 - -
Prci8g1083 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 444 IPR013083 -
Prci8g1083 832 MobiDBLite consensus disorder prediction 484 510 - -
Prci8g1083 832 MobiDBLite consensus disorder prediction 448 539 - -
Prci8g1083 832 Gene3D - 683 832 IPR043151 -
Prci8g1083 832 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 14 831 - -
Prci8g1083 832 Pfam PHD-finger 391 438 IPR019787 -
Prci8g1083 832 MobiDBLite consensus disorder prediction 1 39 - -
Prci8g1083 832 MobiDBLite consensus disorder prediction 278 295 - -
Prci8g1083 832 SUPERFAMILY FYVE/PHD zinc finger 381 445 IPR011011 -
Prci8g1083 832 SMART PHD_3 390 438 IPR001965 -
Prci8g1083 832 ProSitePatterns Zinc finger PHD-type signature. 391 437 IPR019786 -
Prci8g1083 832 MobiDBLite consensus disorder prediction 278 313 - -
Prci8g1083 832 ProSiteProfiles Zinc finger PHD-type profile. 388 440 IPR019787 -
Prci8g1083 832 ProSiteProfiles BAH domain profile. 704 831 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1083 Prci-Chr8 7205641 7211694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1083 390 438 C2H2 Transcription Factor Family AT3G01460 42.857 1.91e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci8g1083 PHD 1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1083 - - gmx:100807139 1025