Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1082 ATGGAATTGACGATGGTTGCTGAGGGGACGGAACCGCCGGAGGAGAAGCGATCCGAGGGCCTGCCAGTGAAAAGGCCGATTGAGAATGGTGGGGGTGAGGAATTGGCCAAGAAGCCTAAGGTTGAAGCTGCTGCTGCTGCGTCTAGCGGGGAGTTCAAGAGGGTGGCGGAGATTGTGCTGGTTTTGTCGACTATGGCGGCAATGCGAGGCGGGAAGAAGCCGACTAATGTGGAGATTGAGTTGATGAAGGAGGCGAGGATGAAGTTGGTGGAATTGTGTCAAGGGATGGCTCCCAAGGACATTGTGGCGAGGGAAGCTGTGGGGACTGTGATTGAGGATCTTGGATTGAACGGGAAGATTAACGATCAGAGATTAGGGTTTCAAAGTCCAAAGATGTCTATAAGCGAAAGGTTATCGCTCTCTAAGTTGAAGATGGAAGAATCAAAGAAGTTTCCTGAACATTCTACTCCATCTACTTCTCAGCCGTTGCAAACAAGCATGGGCGGAATGTTTCCGTTGGACAAACCAAGCCACACAGGACACTCTGCTTCTGCGAACTCTTCATTAAACCAACCCTTGGTGAATGCTCCAACATGGTCGATACAAACTCAAACTCAACCTGCCTCATTAGCTAGAAGTACACCAGAAAACAAAGTGACTGGACATAACTCTGTCAAGTTTGAGGGAATGGGTGACCTAACTGGGCCCAGACCAGCTTCACAAATAGCAAGGGATCAGACCTTTAGACCTTTAGTAACTCAAACAGCACCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATTGGTCAGCCTTCTTCACTTTCTAGCAATCACACTGAAATTGCTAAGATTGTCCAGAAACTGTTACAACCAAAGCTTCCTGAGCATCCCACGTGGACTCCTCCATCAAGGGATTATATGAACAAAGCATTTACTTGCCAGATGTGTGATCTCACTGTCAATGAAGTGGATACTGTTCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAATGTTTGCAGCCATCACTTTTGAGAGGAATTCCTAGGGGTGAGTGGCATTGCATGAGGTGCTTGACATTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCCCCGAACACTCCACCAAAACTGCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAGCTGGAGTTGCAGCTCCAAACGTCAGCTCACAGGAGTTAACAGCAAATGGAGGCTCTGTTTCAACTGATGCTATCAGTAACAATAAAGATGCTGAGCTTCCATCTGTCTCAAAGATCCCTGATACAAAAGAAATGCAAGATAATATTCATTCATCCAGCAGCAAACATATGGATGAGAAGCCTGACCCAAACATCTCAATAAAATCCCTTGGTGCCACTTATGAGCCATCTGTAGGCTTGGCAGGTGAAAGTTCTGCTGAACAAATAATTTCTGAGCCATCTACCTCTAAGGAGAGAACCTTTGCTCCAGAATCAGAAGTGCTTCCTCAATTAACTGAATCAGTTAAGCCTAACAATTTGCAATTGTCCAAAAATGTACAAGTTGAACTGACACCACCATCAAGCAATGTTGAAGTTTCATTATATAAACATGTTGACAATAGTTTGACAGATAATAACAGAAAGGAATCTCATGGGGGAGAAAGTTTGATATATGATATCAAACGTGATGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACACACGCTGAAGGTAGACATTGCACTGCGTTATATTCAGATGGCTTACATGCAGTAGAATGGGTTGGTGATCTTGTACAACTTGTAGAAGAGAAAAGGTTTTACCAATCTTGCCGAGTTAATGGAGTTACATATAGGCTGCAGGATCATGCTCTTTTTAAGTCCAGTCATGGCAAGTTAATTCCATCTAAACTGCGGTCTATGTTTGAAGATAGCAAAACTGGGTTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGCGATAGAACTGAAATGGCTGGCTCCATTCAAGGCCCCTGTGAAGTCCTCCCATCTGATAAATTTCAACAAGAAAACAATAGACGGAGAGAATTAGAACCTGGGGAAAGTGCTAGACTTCGACCAATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2277 0.4387 MELTMVAEGTEPPEEKRSEGLPVKRPIENGGGEELAKKPKVEAAAAASSGEFKRVAEIVLVLSTMAAMRGGKKPTNVEIELMKEARMKLVELCQGMAPKDIVAREAVGTVIEDLGLNGKINDQRLGFQSPKMSISERLSLSKLKMEESKKFPEHSTPSTSQPLQTSMGGMFPLDKPSHTGHSASANSSLNQPLVNAPTWSIQTQTQPASLARSTPENKVTGHNSVKFEGMGDLTGPRPASQIARDQTFRPLVTQTAPGNLSSLHQPLQGMNIGQPSSLSSNHTEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLPPKYGRVMRSPNTPPKLPSNTGGVQPSLEKKAGVAAPNVSSQELTANGGSVSTDAISNNKDAELPSVSKIPDTKEMQDNIHSSSSKHMDEKPDPNISIKSLGATYEPSVGLAGESSAEQIISEPSTSKERTFAPESEVLPQLTESVKPNNLQLSKNVQVELTPPSSNVEVSLYKHVDNSLTDNNRKESHGGESLIYDIKRDDQYVALANSDKSSGTHAEGRHCTALYSDGLHAVEWVGDLVQLVEEKRFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLRSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSDKFQQENNRRRELEPGESARLRPIFLCRWFYDGVKKLFQPVTS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1082 758 Gene3D - 609 758 IPR043151 -
Prci8g1082 758 MobiDBLite consensus disorder prediction 9 23 - -
Prci8g1082 758 MobiDBLite consensus disorder prediction 202 221 - -
Prci8g1082 758 MobiDBLite consensus disorder prediction 146 187 - -
Prci8g1082 758 MobiDBLite consensus disorder prediction 1 39 - -
Prci8g1082 758 ProSitePatterns Zinc finger PHD-type signature. 317 363 IPR019786 -
Prci8g1082 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 370 IPR013083 -
Prci8g1082 758 Pfam PHD-finger 317 364 IPR019787 -
Prci8g1082 758 ProSiteProfiles Zinc finger PHD-type profile. 314 366 IPR019787 -
Prci8g1082 758 MobiDBLite consensus disorder prediction 374 465 - -
Prci8g1082 758 ProSiteProfiles BAH domain profile. 630 757 IPR001025 GO:0003682
Prci8g1082 758 MobiDBLite consensus disorder prediction 202 239 - -
Prci8g1082 758 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 179 757 - -
Prci8g1082 758 SMART PHD_3 316 364 IPR001965 -
Prci8g1082 758 MobiDBLite consensus disorder prediction 410 436 - -
Prci8g1082 758 SUPERFAMILY FYVE/PHD zinc finger 307 371 IPR011011 -
Prci8g1082 758 MobiDBLite consensus disorder prediction 446 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1082 Prci-Chr8 7205641 7212019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1082 316 364 C2H2 Transcription Factor Family AT3G01460 42.857 1.88e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci8g1082 PHD 9.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1082 - - gmx:100807139 765.377