Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1050 ATGGAATCAGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGACTCAGAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATAATGAGAGATCGCACCACAGGTCGTGCTCGTGGTTTTGGCTTTGTAGTGTTTGCTGATCCTGCAGTTGCAGAAAGAGTCATTTTGGAAAAGCACATGATTGATGGTCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGATGATCAGCAGAACCTCTGGCAGTGTACATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGACTGCCTTCCAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTCGGTACAATTAATGATGTTGTAGTGATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTACGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCTGCTGGATCCAGCCGAAGCCTGTTGTTAGGAACTAATTTTGGTTTTAATAGGGGCAGTAGCTACCTAAACAGTTATGCACAGAGTTATAATATGAGTCCAGTTGGGGGCTATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACAAGTAGTAGAAGTGGAATTTCCCCCTTTGGCACCAGCGGTTATGGAATGGGACTGAATCTGGACGCAGGACTGAGTGCAGGATATGGTGGCGGGACTTCAAATTATGGAAGTAATCTCGGATATGGTCGGGTGATTGGTCCTTTTTACAGTGGTAACTCAAGCAGATATACCACTCCTATAGGCTATAATAGTGGTAATGGGAGAAGTGATTCTCTAATGAGCTCATCTTCTCGAAATGTCTGGGGAAATGGTGGCTTAAGTAATGCCAATAACCAAGTCAGTGCTGGTGCTAGCTTGGGATCTGGAGGTGGTCCTTTTGGTGTTTCAATTAAAAATAGTGGCACAAATTGGGGTCAATCCTTTCCAACGCAGGGTGGAGTGGCTGCTTCCGGTTACACCACTGGGATTAATGTTTATGAAGGTGGCGACAACAGTTTTGGGTTAGGAGGTACAGGGTATGGAAGAAGTGGTAATATAGGTGTAAATTCATCTTCTACATTTTCTACATCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCACAATAGTTCAGTTTACAGTGACTCAGCTTGGCGATCTGCCGCTTCTGATCCAGATGGTTCTGGTTCATTCAGTTATGGACTTGGTGGTATAGCCTCAGAGGACCCAGTAAAGACTTCAGAGGGTTATATTGGAAGCTACAATGTTTCAAGCAGACAGCCTAATAGAGGAATTGCTGCCTAG 1437 0.4384 MESDLGKLFIGGISWDTDEERLREYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVILEKHMIDGRTVEAKKAVPRDDQQMISRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELSAGSSRSLLLGTNFGFNRGSSYLNSYAQSYNMSPVGGYGVRMDGRFSPLTSSRSGISPFGTSGYGMGLNLDAGLSAGYGGGTSNYGSNLGYGRVIGPFYSGNSSRYTTPIGYNSGNGRSDSLMSSSSRNVWGNGGLSNANNQVSAGASLGSGGGPFGVSIKNSGTNWGQSFPTQGGVAASGYTTGINVYEGGDNSFGLGGTGYGRSGNIGVNSSSTFSTSAGGYEGSYGDLYHNSSVYSDSAWRSAASDPDGSGSFSYGLGGIASEDPVKTSEGYIGSYNVSSRQPNRGIAA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1050 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Prci8g1050 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Prci8g1050 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Prci8g1050 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Prci8g1050 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Prci8g1050 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Prci8g1050 478 Gene3D - 103 192 IPR012677 -
Prci8g1050 478 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Prci8g1050 478 CDD RRM2_Hrp1p 107 184 - -
Prci8g1050 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Prci8g1050 478 Gene3D - 6 88 IPR012677 -
Prci8g1050 478 MobiDBLite consensus disorder prediction 81 105 - -
Prci8g1050 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Prci8g1050 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Prci8g1050 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Prci8g1050 478 SUPERFAMILY RNA-binding domain, RBD 105 206 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1050 Prci-Chr8 7020300 7025038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1050 2 217 Eukaryotic Initiation Factors Gene Family AT2G36660 29.386 4.44e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1050 K14411 - gmx:100805131 756.903