Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1016 ATGGCCACAAATGATCGCCGTTTTGTAGAATGGAAGGAGCAGTTTATTTCGCAGGAGCGTGGCAATCGTGTTGTCCACTATTACCTGAAGGATTCTGCTGGGGATTCCACACTTGCAGTTGTGGGCACTGAGAGGAGCCTGAGACACATGTTCTATGTTGTTGCTGAGGAGTTTCTAGAAGTTTGCGGGAAGGAGGGTACCATCCATGCTGGTTTCAAATGGAGGTCGAGAAGAGAGGTTGTGGACTGGTTGACATCAATGCTATCAAAGCAGCATCAACTGGGGGACAAGAGCGTGTCGCCAAGTCATAACTTGGCACAAGCTCATGACACCACAACTAGCAGTCTCAAAGAATTTATTGATCTGCATGCACAGATATCTGATGACAAGGGCCTTCTGATGAGCAGCTTCAAAGGACACAATTCTGACATTGTTTGGTCAGGAATTGCCTGGACATGTGGCAAACAGCTTAAACATTATCCTGCTTTTTACAGGAATGGGATCAAAATAGCAATTCAATCTTTCGTTTTTGTGATGGCAACGGGAGAAAATCATTATATTGCATATTTGGAGGACATGTACGAAGACAGGAGGGGTCAGAAAAAGGTTAAAGTGAGGTGGTTTCACCATAATCAAGAAGTCAAGGGTGTAGTTCCAGTGAGAAATCCTCACCCTCAAGAAGTTTTTATCACATCATATTCTCAGGTAATTAGTGCTGAGTGTGTTGATGGCCCTGCCACAGTCTTAACTCGGGAGCATTACGATAAACTCTTGCCTTCTTTTTCTCTTGCCTCATCAAATAGAATCCATTTGTGCTTTAGGCAATTCAGAAACAACAAAGTAAAGCCCTTTGACTTGAGTAAATTGCGAGGCTACCATGATCAACCAATTCTCTCTTGCTTGAACCTTGATTCCTTCCAAAACCCTTCATGTAATAAGCTTGCCGAAGAAGATGAGGAGCTGAGCCAAGGTGATGATGTAAGGCCAGGAGGTAAGGGGAGCAAGAGGAGTAGAGGATCTTTTCAGCGCTTGATCGATCACCAGGGAGTTAGGAAATTAAGTAGGAGTCAACAAACGATGGTGTACAAAACCATTGAGAATGTAGATTACACTAGGCCAAATAGGAGATTGCTTTCCCAGAAACAGGTTGATCATCAGCCCTGGTATAACTCCAAATACAAGGTTGATGACAAGATAGAGTTACTCTGTCAAGACAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTTGTGCACGTATCCCAGAAACAGATAAAAGTCCAGTACGATGATGTGCAGGATGAAGATGGAGGCGGCAATCTTGAGGAATGGATCCCTGCTTTCAAACTTGCCATGCCTGATAAACTTGGGATGAGACATTCAGGCCGGCCCACCATCAGGCCGGCCCCAACTGATGAGGCGCAACAAGAACTGGCTGTTGAGACTGGGACTGCAGTAGATGCATGGTGGAGTGATGGTTGGTGGGAGGGGGTTGTAAGTGGAATTGATAACTTTGATGATGATAATGTACAAGTTTACTTTCCCGGTGAAGGTCTGTTAAGGACAGTGTGCAAGAAGGATCTAAGAGTGTCAAGAGATTGGCTGGGGGATCGATGGGTTGATATTGAGCCAAAGCCTAATGTAGCCTCTACCATATCTGCTGTCAACAGCTCAAGCACAAAGTTTTCGGTGCCCCCATCTACCACTAAAGATGTTGACTCTTCTGGGGTTGTTATTTCATGTCAAGATGTTCCTGGTATCGAGAAGTCTAATGAACTAAATGATGCTGCTGAAGACGCGAATCGGGCTATTGATAACAAGCCCCCTTCACAAGAAGAGACAAGTGTTGAAGTTGTTGAGACTGAGCAACATGGAAGTTGCGATAACGAAGATAACCATGATGATGACAAAGACAATAAGGAAGAGAATGATGGCGATGATAATGATGCGAGGGATATGGAGGTGCTTGGGACTTCTGGAGAGGACTCCAAAGTCATGGAACCCATGGAAGTGGCTGTTTAA 2022 0.4491 MATNDRRFVEWKEQFISQERGNRVVHYYLKDSAGDSTLAVVGTERSLRHMFYVVAEEFLEVCGKEGTIHAGFKWRSRREVVDWLTSMLSKQHQLGDKSVSPSHNLAQAHDTTTSSLKEFIDLHAQISDDKGLLMSSFKGHNSDIVWSGIAWTCGKQLKHYPAFYRNGIKIAIQSFVFVMATGENHYIAYLEDMYEDRRGQKKVKVRWFHHNQEVKGVVPVRNPHPQEVFITSYSQVISAECVDGPATVLTREHYDKLLPSFSLASSNRIHLCFRQFRNNKVKPFDLSKLRGYHDQPILSCLNLDSFQNPSCNKLAEEDEELSQGDDVRPGGKGSKRSRGSFQRLIDHQGVRKLSRSQQTMVYKTIENVDYTRPNRRLLSQKQVDHQPWYNSKYKVDDKIELLCQDSGIRGCWFRCTVVHVSQKQIKVQYDDVQDEDGGGNLEEWIPAFKLAMPDKLGMRHSGRPTIRPAPTDEAQQELAVETGTAVDAWWSDGWWEGVVSGIDNFDDDNVQVYFPGEGLLRTVCKKDLRVSRDWLGDRWVDIEPKPNVASTISAVNSSSTKFSVPPSTTKDVDSSGVVISCQDVPGIEKSNELNDAAEDANRAIDNKPPSQEETSVEVVETEQHGSCDNEDNHDDDKDNKEENDGDDNDARDMEVLGTSGEDSKVMEPMEVAV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1016 673 Pfam BAH domain 171 259 IPR001025 GO:0003682
Prci8g1016 673 Pfam Agenet domain 396 470 IPR008395 -
Prci8g1016 673 CDD Tudor_Agenet_AtDUF_rpt1_3 393 470 - -
Prci8g1016 673 Gene3D - 137 303 IPR043151 -
Prci8g1016 673 SMART BAH_4 168 287 IPR001025 GO:0003682
Prci8g1016 673 SMART agenet_At_2 391 456 IPR014002 -
Prci8g1016 673 SMART agenet_At_2 478 536 IPR014002 -
Prci8g1016 673 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Prci8g1016 673 MobiDBLite consensus disorder prediction 317 333 - -
Prci8g1016 673 MobiDBLite consensus disorder prediction 602 673 - -
Prci8g1016 673 MobiDBLite consensus disorder prediction 317 340 - -
Prci8g1016 673 Coils Coil 587 607 - -
Prci8g1016 673 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 392 618 - -
Prci8g1016 673 MobiDBLite consensus disorder prediction 617 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1016 Prci-Chr8 6753807 6758422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1016 405 534 PHD Transcription Factor Family AT5G58610 28.571 1.05e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1016 - - pcin:129318488 1340.1