Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1006 ATGGCGGACTCGGATAACGATTCCGGAGGGGGGCAGAACGCTGGAGCTAATGCAAACAGCAGCGAATTGTCACCGCGAGAGCAGGACCGGTTCCTACCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCGCTACCGGCGAATGCGAAGATCTCAAAGGACGCGAAGGAGACGGTACAGGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGGAAGACCATAAACGGGGACGACTTACTGTGGGCGATGACCACGCTGGGATTTGAGGACTACGTGGAGCCACTGAAGATTTACTTGCAGAGGTTCAGGGAGATGGAGGGAGAGAAAAGCGTGGTGGCGGCGCGTGACAAAGAAGGAGGCGGCGCGTCGAATAGTGCATTCGACGGCAGTGGCGGGGTGTACGGGGGCAGCGGAGGTGGAATGGGAATGATGATGCATCAGGGACACGTGTACGGCTCTGGTGGGTTTCATCAAATGGGCGTGAGTGGTGGTCCTGTTATGGGCAAGAGTGGGCCACCTTATCCGGGTCCTGGATCAAATACGGGTAGACCCAGATAG 594 0.5707 MADSDNDSGGGQNAGANANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVAARDKEGGGASNSAFDGSGGVYGGSGGGMGMMMHQGHVYGSGGFHQMGVSGGPVMGKSGPPYPGPGSNTGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1006 197 Gene3D Histone, subunit A 19 139 IPR009072 GO:0046982
Prci8g1006 197 MobiDBLite consensus disorder prediction 1 26 - -
Prci8g1006 197 FunFam Nuclear transcription factor Y subunit B-3 20 141 - -
Prci8g1006 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Prci8g1006 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Prci8g1006 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Prci8g1006 197 MobiDBLite consensus disorder prediction 173 197 - -
Prci8g1006 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Prci8g1006 197 SUPERFAMILY Histone-fold 28 130 IPR009072 GO:0046982
Prci8g1006 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Prci8g1006 197 MobiDBLite consensus disorder prediction 1 28 - -
Prci8g1006 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1006 Prci-Chr8 6695367 6696838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1006 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.091 4.93e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Prci8g1006 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1006 K08065 - qsa:O6P43_021302 289.271