Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g1002 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGTGGGGATCCGATGGATCAGTTTCATCGCAACGAAGCGATATCAGCTGTAGCTGATGATGGTTTCTTGGCCGAGGAGGACGACGATTACGAGGACCTTTACAACGACGTTAATGTTGGGGAAGGGTTTCTTCAGTCTTTAAGAAAAAACGAGGATTCCGGGTTTCGGAATGAGGAGGTTGAGGAGAAAAAGACTCAATCAGTCGCGATGCCGCCGGAAACTGGTGGCGTTTCTATACCAGGTGTCGGTGTCGGTGGTGGTAGCAGTACTGGTGGCGAGGTCGCTGCCTCCGGGGTTATGGATGTCGCGCCCAGGGTTCCAGGGAGAGCAGATGGGATTCAAAATCAAGGGTTTAGAGGGAGTGAGATGGGTGTGAAAGGTAGTGGTGGATCGGGTACCTCTATGGGTGGTGGAGGTGGGATGAGGGTTGAATTAGGGCAACAACCGGGCAAGTTGAATGAGATAGAGGAGCAGAGTGCGAACAACAGTGTGGCAGTACAAGGCATGGGGCAGCAACCTCATGGCGGAGTTGTTGGGAATGTGGGAAATGAGAATTTGATGAGGCAAGGTGGTGGTGGAGGAAATCTCAATAGGGCTGGTGGCAATGGGGTTGGAAATAACGCGAGTGGTGTCACTGTTGTCAATACTGGAGGAGGAACTGTTATTCCGGCTGCTGGTGGTGGTGGTGGTGGTGGTGCTGGAAGTGGTGGTGGGGGAACCATTTTATTTGTTGGTGATTTACACTGGTGGACTACTGATGCTGAGTTGGAGGCAGAACTTTGTAAGTATGGGCCAGTGAAGGAGGTGAAATTTTTTGATGAGAAGGCTAGTGGGAAGTCGAAAGGGTATTGCCAGGTTGAATTTTATGATCCTTCCGCTGCATCTGCTTGTAAGGAAGGAATGAATGGGCATATGTTTAACGGGCGACCGTGTGTCGTTGCTTTTGCTTCTCCTTTTACTGTCAAGAGAATGGGAGAGGCTCAGGTGAACAGGAATCAACAGATGGCCCAATCTGCCGTTTCTCAGACAAGGAGAGGACCTGCTGATTCCGGGGCTAAGACGGGTGGGAGTAACATCACTACTGGTGGAAACTACCAAGGTGGAGATGGCAACCGAGGCTATGGAAGAGGTAACTGGGGAAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAATAGGGGTGGAATGGGGGGTAGAGGTATCATGGGTAATGGTGGGAATGGATTTGGACAAGGAATTGGTGCCACCCCACCTCTGTTGCATCCCCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGCCTATGGGTAGAATGGGTGGCTATGGAGGCTTTCCAGGTGGTCCAACTCCTCCATTCTCTGGCATTTTGCCTTCTTTCCCTGCAGTTGGCGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCCATGAATGGCATGGGGATGATGTCCACTTCAACAGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGTGGTGAAGAGCATGGTGGTGGGAGGGCTGGAGAGTCGAGTTATGGGGAGGAAGCTGCGTCAGAACATCAATATGGTGAGGTGAGTCATGATAGAGGCGGTTGGCCAAATGCCATGAGGGAAAAAGATAGAGTATCAGAAAGGGACTGGTCTGGCTCTTCTGAACGAAGGTACAAGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAGAAAGACATGGGGCAAGACCATGAATGGTCTGAAAGAAGACACCGTGATGAAAGAGAAGCAGGTCGTGAACGTGATAGGGAGCGTGACCGTGATCGTGAACGGTCTCGAGACCGTGACCGTGACCGTGAAAGGGATCGGGAAAGAGACCGTGATCGTGATAGGTACAAGGAAGAAAGGGACAGATATGCTGACCATCATAGGTACAGAGATCGTGAGGCAGACCATGAGGATGAGTGGGAACGGGGACGGTCATCAAGGACTCACAGCAAGTCAAGATTATCACAAGAGGACGATCATCATTCTAGATCTAGGGATGCTGATTATGGAAAGAGGAGACGTCTTACATCTGAGTAA 2166 0.5065 MDEGEGGYGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEVEEKKTQSVAMPPETGGVSIPGVGVGGGSSTGGEVAASGVMDVAPRVPGRADGIQNQGFRGSEMGVKGSGGSGTSMGGGGGMRVELGQQPGKLNEIEEQSANNSVAVQGMGQQPHGGVVGNVGNENLMRQGGGGGNLNRAGGNGVGNNASGVTVVNTGGGTVIPAAGGGGGGGAGSGGGGTILFVGDLHWWTTDAELEAELCKYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASACKEGMNGHMFNGRPCVVAFASPFTVKRMGEAQVNRNQQMAQSAVSQTRRGPADSGAKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGGPMGRMGGYGGFPGGPTPPFSGILPSFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMSTSTVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEEAASEHQYGEVSHDRGGWPNAMREKDRVSERDWSGSSERRYKDDRDQGYERDAPREKDMGQDHEWSERRHRDEREAGRERDRERDRDRERSRDRDRDRERDRERDRDRDRYKEERDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEDDHHSRSRDADYGKRRRLTSE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g1002 721 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 660 IPR034772 -
Prci8g1002 721 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 321 IPR000504 GO:0003723
Prci8g1002 721 MobiDBLite consensus disorder prediction 119 148 - -
Prci8g1002 721 MobiDBLite consensus disorder prediction 351 377 - -
Prci8g1002 721 MobiDBLite consensus disorder prediction 518 721 - -
Prci8g1002 721 MobiDBLite consensus disorder prediction 61 76 - -
Prci8g1002 721 MobiDBLite consensus disorder prediction 351 381 - -
Prci8g1002 721 CDD RRM_CFIm68_CFIm59 252 325 - -
Prci8g1002 721 Gene3D - 243 388 IPR012677 -
Prci8g1002 721 SMART rrm1_1 251 324 IPR000504 GO:0003723
Prci8g1002 721 MobiDBLite consensus disorder prediction 1 23 - -
Prci8g1002 721 SUPERFAMILY RNA-binding domain, RBD 248 335 IPR035979 GO:0003676
Prci8g1002 721 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Prci8g1002 721 MobiDBLite consensus disorder prediction 59 87 - -
Prci8g1002 721 MobiDBLite consensus disorder prediction 554 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g1002 Prci-Chr8 6677620 6682527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g1002 227 326 Eukaryotic Initiation Factors Gene Family AT4G34110 28.000 2.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g1002 K14398 - qsa:O6P43_013551 775.007