Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0915 ATGAGGATCACTGTAATGACTGCTGATCAACAAATTGTTACGTTGGATGTCGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAACAGCAACTCCTCTACAACGGAAGGGAGATGAGTAATTCTGAGAAACTGAGTGCTCTCGGTGTTAAAGATGAAGATTTGTTGATGATGGTCTCTGCTGCTCCTTCTGGTGCACCTGCCAATGATTTAGGCTTCAATCCTGATGGATCTGCTGTTAACCCTGCTGCTTTCCAACAGCACATTAGACAGGATTCTAACCTGATAGGTCAGCTCTTTCAGACCGATCCAGAGTTGGCACAAGCCATTCTAGGAAGTGATCTTAACAGAATACAAGAGATTTTACGAATGCGTCATCAACAGAGAGCTGAATTGCAGCGCCAAAAAGAGGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATTGATGAAAACTGGGCAGCTGCACTAGAACATAATCCTGAAGCTTTTGCAAGAGTGGTCATGTTGTATGTTGACATGGAGGTTAATGGTGTTCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACAATTATATCAAAAAGCTGTGCTGAGCGCTGTGGATTGTTAAGACTTCTAGATCAGCGTTACAAGGGAATTGCTCAGGGAGTTGGCCAATCAGAGATATTAGGCCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCATTCTTGGTGCTGGATTCTCCTAACATGGAATTCCTTTTTGGGCTTGATATGCTCCGAAAGCACCAGTGTATTATAGATTTAAAAGAAAATGTTTTGCGAGTTGGTGGGGGAGAAGTTTCTGTGCCATTTTTGCAAGAAAAAGACATACCATCTCGGTTTCTGGATGAAGAAAGGCACGCCAAGGAAGCATCCAGCTCAGGTGGTCTGGCAACAGGAACAACAGATAGGAGTGGTAGTACACCGAAAGGAGGCCAGTCTTCAGGAGGAGCTTCTGGTAGCACTTCTCAGGAGAGTGATTTTGAAGCAAAAATTGCAAAGCTGGTGGAGTTAGGGTTTGGAAGAGAAGCAGTGATACAAGCTCTTAAATTATTCAATGGCAATGAGGAACAGGCTGCTGGGTTTCTGTTTGGGGGTTTTTAG 1230 0.4374 MRITVMTADQQIVTLDVDPHESVENVKALLEVETQVPLQQQQLLYNGREMSNSEKLSALGVKDEDLLMMVSAAPSGAPANDLGFNPDGSAVNPAAFQQHIRQDSNLIGQLFQTDPELAQAILGSDLNRIQEILRMRHQQRAELQRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAQGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEERHAKEASSSGGLATGTTDRSGSTPKGGQSSGGASGSTSQESDFEAKIAKLVELGFGREAVIQALKLFNGNEEQAAGFLFGGF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0915 409 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci8g0915 409 SUPERFAMILY UBA-like 355 408 IPR009060 GO:0005515
Prci8g0915 409 Coils Coil 129 149 - -
Prci8g0915 409 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Prci8g0915 409 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Prci8g0915 409 Pfam UBA/TS-N domain 371 404 IPR015940 -
Prci8g0915 409 Gene3D Acid Proteases 175 321 IPR021109 -
Prci8g0915 409 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Prci8g0915 409 CDD UBA_scDdi1_like 371 406 - -
Prci8g0915 409 Gene3D - 342 408 - -
Prci8g0915 409 SMART ubq_7 1 72 IPR000626 GO:0005515
Prci8g0915 409 MobiDBLite consensus disorder prediction 336 367 - -
Prci8g0915 409 SMART uba_6 370 407 IPR015940 -
Prci8g0915 409 MobiDBLite consensus disorder prediction 330 367 - -
Prci8g0915 409 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Prci8g0915 409 FunFam DNA damage inducible 1 homolog 2 174 321 - -
Prci8g0915 409 Gene3D - 1 81 - -
Prci8g0915 409 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Prci8g0915 409 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Prci8g0915 409 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 408 IPR015940 -
Prci8g0915 409 SUPERFAMILY Acid proteases 182 297 IPR021109 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0915 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 9.85e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0915 K11885 - qsu:112012964 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0915 8 5974932 5981917 Prci8g0915 8 5974932 5981917 ECH