LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci8g0895	ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGACTGATCCACATTCTTTTCCACCAAACAATGTTTATTCCGAGCCTCCTTGGTGGCGTGGCGTTGGATACAATCCTATGTCCCAAGCAATGGCTGGGGCAAATGCATCGAATTCATCCTCGCTGGAATGCCCTAATGCTGATTCTGAATCAAATGATGGTCAATCTTTGTCCAATAGTGGGTTGAATGAGGAAGATGATGATGCCACTAAAGAATCTCCAGCTGCTGCTCCTAATCAATCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCATACTTCATCGTCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCTCCACAGCTCGAACTTGTTGGACATTCAATTGCGTGTGCTTCACATCCTTATCAGGATCCCTATTTTGCGGGAATGATGGCGGCTTATGGACCTCACCAGCTGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAACCTGTTTATGTAAATGCAAAACAATACCCGGCCATTCTTAGGCGTAGACAGGCACGTGCAAAGGCAGAGCTTGAAAAGAAGTTGATAAAAGTTAGAAAGCCATACCTTCATGAATCTCGGCATCAGCATGCGATGAGGAGGGCAAGGGGCACCGGAGGACGTTTTGCAAAGAAAAATGATGCTATTGATGGCAAAGAAAAGGATGTGGGATCTGGTCCAAGGTTATCTTCACAATCAGTTAGTTCATCTGGTTCTGAACCTTTACCCTCTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCGACAAGATGCTAGAGGATATAAACTTTCTGACCAATATGATGCACACAACTATGCAAACAATAGTGGCCCTTATCATAATCGTAGTAGCTTGCAGTCTTCCACTTATCATTTGCACTCAGGTGAAAGAGTGGAGGAAGGGGACTGCTCAGGACAACAGCGGGGGAGTATCTCTTCCGAACACACTTCACAGAGGCGTCTTGCGATTCAGTAG	1044	0.4617	MQSKSETANRLRTDPHSFPPNNVYSEPPWWRGVGYNPMSQAMAGANASNSSSLECPNADSESNDGQSLSNSGLNEEDDDATKESPAAAPNQSGNYVQEHQGMQHTSSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGMMAAYGPHQLGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKNDAIDGKEKDVGSGPRLSSQSVSSSGSEPLPSESAETWNSPNVRQDARGYKLSDQYDAHNYANNSGPYHNRSSLQSSTYHLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	291	315	-	-
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	291	347	-	-
	Prci8g0895	347	SMART	cbf3	173	234	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	Gene3D	-	174	236	-	-
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	1	20	-	-
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	1	93	-	-
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	328	347	-	-
	Prci8g0895	347	ProSitePatterns	NF-YA/HAP2 subunit signature.	179	199	IPR018362	GO:0003677\|GO:0016602
	Prci8g0895	347	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	176	231	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	41	74	-	-
	Prci8g0895	347	PRINTS	CCAAT-binding transcription factor subunit B signature	208	231	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	PRINTS	CCAAT-binding transcription factor subunit B signature	177	199	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	210	277	-	-
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	229	246	-	-
	Prci8g0895	347	ProSiteProfiles	NF-YA/HAP2 family profile.	174	234	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	210	228	-	-
	Prci8g0895	347	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	22	285	IPR001289	GO:0003700\|GO:0006355
	Prci8g0895	347	MobiDBLite	consensus disorder prediction	248	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci8g0895	Prci-Chr8	5867107	5871622	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci8g0895	1	274	CCAAT-HAP2 Transcription Factor Family	AT5G12840	51.264	3.57e-79	241

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Prci8g0895		CBFB_NFYA	2e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci8g0895	K08064		-	qsa:O6P43_013957	503.056