Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0870 ATGTCTTACTCAAGAAGATCAAGGTATTCTCAATCACCTCTGTACAAGCGATACAGTAGGTCTGTTTCCAGGTCTCTGTCACGGTCAAGATCCAGGAGCTTTTCAAGGAGCCCATCAAGGGATGCAGAGAATCCCGGTAACAATCTGTATGTGACAGGGTTGTCTCCTCGGATTACCAAGAGAGAGTTGGAGAAGCATTTCGCAAGCGAGGGGAAAGTGAGTGACGTTCACCTGGTTGTTGATCCATGGACAAGAGAATCACGAGGGTTTGGATTTGTGACTATGAGAACTGTTGAGGATGCTGATCGGTGTGTAAAGTATCTGAATCGCTCTGTTCTAGAAGGGCGTGTCATCACAGTAGAAAAGGCTAGAAGAAGTCGGGGTCGAACCCCGACACCTGGGAGGTATCTTGGGTTAAGGACCGTTCGGGTGCGTCGTCGCTCTTCAAGCTATTCGCCTCGGCGATCCCCTAGTTATTCTCCTTACAGAAGAAGCTACAGCCGATCACCATATTCTTCTGATCGCACTAGGAGTCGTTCTTATTCTCCCTATCACAGTCGACGGAGGTCTTACTCCCCATATTATAGCCGGGACAGATCTTATAGCCCTTATGCTCGACACAGGTCCTACTCTCGATCCCGCTCGCCATACAGCAGGTCACCTGTCAGGAGGCGTGATAGATCGTTCTCTCCTTATGACTCACCTGATGATCGCTACTACAAAAGGCACAGATACAGGTCCATTTCCCCAAGTGCCTCCCCAAGGCCAAGGAGAAGTTCAAGGAGATATTCCCGCAGTGTGTCCCCTGTGCAGAGGAGGAGCTCAAGAAGGAGCTATTCAAGGAGTATTTCCCCTCGACCGAGGAGTTCACGGAGAAGGAGCTCTTCTCGAAGTCTTTCCCCTAGACCGAGGAGGAGTTCACGAAGGAGGTATTCTCCCAGCATCTCTCCAAGACCAAGAGGCAGTAGGAGAGGTGGTTCTTTTAAACGTGGGCGTACACCAGTTAGTGATAGAAGCTACTCAACAAGTCCGAGTGTGAGTGCAAGTTCAAGGTCATTTTCAAGGTCTCCTACTCCCAGATCAGCTTCCCCTTGA 1095 0.4995 MSYSRRSRYSQSPLYKRYSRSVSRSLSRSRSRSFSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVSDVHLVVDPWTRESRGFGFVTMRTVEDADRCVKYLNRSVLEGRVITVEKARRSRGRTPTPGRYLGLRTVRVRRRSSSYSPRRSPSYSPYRRSYSRSPYSSDRTRSRSYSPYHSRRRSYSPYYSRDRSYSPYARHRSYSRSRSPYSRSPVRRRDRSFSPYDSPDDRYYKRHRYRSISPSASPRPRRSSRRYSRSVSPVQRRSSRRSYSRSISPRPRSSRRRSSSRSLSPRPRRSSRRRYSPSISPRPRGSRRGGSFKRGRTPVSDRSYSTSPSVSASSRSFSRSPTPRSASP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0870 364 FunFam Serine/arginine-rich splicing factor SR45a 2 131 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 123 364 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 1 52 - -
Prci8g0870 364 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 282 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 334 364 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 252 285 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 219 244 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 151 189 - -
Prci8g0870 364 CDD RRM_SF 49 121 - -
Prci8g0870 364 MobiDBLite consensus disorder prediction 286 311 - -
Prci8g0870 364 Gene3D - 2 131 IPR012677 -
Prci8g0870 364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Prci8g0870 364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Prci8g0870 364 SUPERFAMILY RNA-binding domain, RBD 36 151 IPR035979 GO:0003676
Prci8g0870 364 SMART rrm1_1 48 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0870 Prci-Chr8 5704066 5707337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0870 48 162 Eukaryotic Initiation Factors Gene Family AT2G36660 31.897 2.99e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0870 - - gmx:100805126 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0870 8 5704066 5707337 Prci8g0870 8 5704066 5707337 ECH