Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0811 ATGTGCAGTGGTTCCAAGAGGAATCCTTCTCAAGCAGATTTCGTCATGGAGGGCGAATATGGGAAACAAGAGGGGCTGCATCATAAGACTTCTGTGTTGCTTGAGCTCGCGGCCTCAGATGATGTTGTGAGTTTCAAAGATGCAGTTGAGCAAGAGGGTCTTGATGTCGATGAGGCGTGCTTGTGGTATGGAAGGAAGATTGGCTTAAAGAAATGGAGTTATGAAGAGAGGACTCCTCTCATGATTGCTTCTATGTTTGGAAGTAAGGGCGTGTTAAGTTATATACTCAGAACTGGTCATGTTGATGTTAACAGGACTTGTGGATCAGATGGAGCTACGGCCCTTCATTGCGCTGTTGCCGGTGGTTCAGCCTCATCCCCTGAGGTTGTTAAGCTTTTGCTTGATGCATGTGCAGATGTTAGCACTGTTGATTCTAATGGTAACCGACCTTCTGACTTGATCGTCTCCGGGGTTAATTCGATCTTCAATTCAAGGAAGAGAATCCTACTAGCCATCCTGAAGGGTACAGATGTTATTGATGAGGCATGCCTCTCATTTGAGGATACAGTTAGCCAGATGGAGGAACAACAACAGCAAGATACGGCTGCGTCTCGTGTTTCCAGAGATGGGACTGAGAAGAAAGATTATCCTATCGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTGAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGGCGTGATCCCAGAAAATATCATTATAGCTGTGTTCCTTGTCCGGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACACGGCTTTGCAAGGACGAGAGTGCTTGCACCAGAAGAGTTTGCTTCTTTGCTCATAAGCCGGAGGAGCTTCGCCCCTTGTATCCTTGCACCGGTTCAGCTATACCTTCTCCCAGATCATTTTCAGCTAGTTCATGTTCTTTGGAGTTGGGATCACCGAGCCCTCTGTCACTGGGTTCTTCATCTTTCATGATACCCTCAGTCTCAACACCTCCTCTTACTCCATCTGGTGCATCTTCTCCTGCTGGTGGAACCACGTGGCAGGTCCAATCTAATGGTGGAGTCCCTACCTTGCAACTGCCAAGAAGCAGACTAAAAGCTGCTTCAAGTGCTAGAAATGTTGATTTAGATATTGAATTACTTGGACTTGAAAATCATCGGCGCAGGCAGCAGCTTATGATGGATGAGATTTCTGGTCTTTCCTCACCGTCAAGCTGGAACAATTCCATGCTTGATAGTCATTCTTTTCCTGTCTCTTTTGGTGATCAAGCTGGGGAGCTGAATAGGCTTTCGGCAATGAAGCCTACCAACCTTGATGACATTTTTGGGTCAGTTGATCCATCAATTTTGCCCAAATTACAGGGAATTTCACTAGAAACTGTAGGTCCTCAGTTGCAATCGCCAACTGGATTCCAAGCGCTTCAGAACACAAACCTGCATCTGCGCAGCTATTCTTCTGGCCTTTCCAATTCAATTGGAATGGGCTCTCCATCTTCTGTGAATGATCCAACTGTCTCAGCGGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCCTTTTCTAAGAGAAGCCAGAGCTTTATCGAGCGCAGTGCAGTAAACCGTCATCCAGAGCTTTCTTCTCCAGTTTCTTCAACAACAAAGGCTTCTGCCTTATCAGACTGGGGCTCCCCTGATGGAAAGTTGGACTGGGGTATCCATGGAGAAGAGCTGAATAAGCTGCGGAAATCTGCTTCTTTTGGATTTCGAAGCAGTAGGAGTACCCGAGTGCCAGCAAATCTCAATGAACCAGATGTTTCTTGGGTTCATTCACTAGTAAAGGATGCTGCACCACCAGAATCTGGTCAATTTAGTGCTGAAGAACAGCAACAGCAGAAGCTGCAATGCCATCATAACAATGGAACAGAAGCAGTTCCAGCCTGGCTCGAGCAATTTAACACTGAGCAGGAGCAGATGGTAGCATGA 2118 0.4669 MCSGSKRNPSQADFVMEGEYGKQEGLHHKTSVLLELAASDDVVSFKDAVEQEGLDVDEACLWYGRKIGLKKWSYEERTPLMIASMFGSKGVLSYILRTGHVDVNRTCGSDGATALHCAVAGGSASSPEVVKLLLDACADVSTVDSNGNRPSDLIVSGVNSIFNSRKRILLAILKGTDVIDEACLSFEDTVSQMEEQQQQDTAASRVSRDGTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESACTRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSASSCSLELGSPSPLSLGSSSFMIPSVSTPPLTPSGASSPAGGTTWQVQSNGGVPTLQLPRSRLKAASSARNVDLDIELLGLENHRRRQQLMMDEISGLSSPSSWNNSMLDSHSFPVSFGDQAGELNRLSAMKPTNLDDIFGSVDPSILPKLQGISLETVGPQLQSPTGFQALQNTNLHLRSYSSGLSNSIGMGSPSSVNDPTVSAATTMALNARLAAFSKRSQSFIERSAVNRHPELSSPVSSTTKASALSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSRSTRVPANLNEPDVSWVHSLVKDAAPPESGQFSAEEQQQQKLQCHHNNGTEAVPAWLEQFNTEQEQMVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0811 705 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Prci8g0811 705 SUPERFAMILY Ankyrin repeat 47 158 IPR036770 -
Prci8g0811 705 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Prci8g0811 705 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Prci8g0811 705 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Prci8g0811 705 SMART ANK_2a 75 105 IPR002110 GO:0005515
Prci8g0811 705 SMART ANK_2a 110 142 IPR002110 GO:0005515
Prci8g0811 705 Gene3D - 275 337 - -
Prci8g0811 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Prci8g0811 705 PANTHER UNKEMPT FAMILY MEMBER 35 659 IPR045234 -
Prci8g0811 705 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Prci8g0811 705 Pfam Ankyrin repeats (3 copies) 68 142 IPR002110 GO:0005515
Prci8g0811 705 Gene3D - 26 167 IPR036770 -
Prci8g0811 705 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0811 Prci-Chr8 5219700 5222730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0811 28 700 C2H2 Transcription Factor Family AT5G12850 38.741 1.22e-140 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci8g0811 Ank_2 2.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0811 - - aprc:113846970 970.304