Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0806 ATGGCGGTGGAGGAATTGGAGTCTCCTGGGAGAAAGCGCAAGCGAGGGTCTGGAAAAAGGAAGCTCGTTGTCAATGATAGAGTGGAGGTGAGAAGTATCGAAGATGGCTTTTTGGGTTCATGGCACCCGGGGACTGTTATCCAATGTGGGAAGCAGAAACGTCATGTCCGATATGATAACGTTTTAGATGATAATGGGTCAAATTATCTTGTCGATGTAGTGGATGTTCCGGCTATTTTGGATGGCGCCAGTTCCACAATTTACAATGAACGCGGATTTATTAGACCACCGCCACCTTCGAAGGAGTTTGGGAAATGGGACCTTCCTTTTGGTCTCTGTGTTGATGTGCACTATCAAGAAGCTTGGTGGGAAGGTGTTATTTTTGATCACTGTGATGGGATGGAGGAGAGATCCATATTTTTCCCAGATTTGGGTGATGAAATGAAGATTAAAATCGATCATTTGCGTGTTACTCATGACTGGAGTGAAGTTACTGAGGAATGGGAGAGACGAGGCATGTGGGTATTTCTTGAATTGGTTGAAGAGTGTGAACAGGATACTTATGTTGCAGTTTCAGTAAAGCAAATCTGGTATGATGTGCGTGCAAAAGAAGATTTCGATAAGATTAGAGACTGGACTTGTAATGTGAAAGACTTGTGGAGAGATCTGGTACTAGAGGTAATTAATGACTACTTTGCACTTACACTGCGGGAAGTTTTCACCGTCTTTGATATTTCAAAAGATCTCTTGACAGTAGCACTAGAACCAGAGTCAGCTGCACCTACTGCTGATATTCACATAAATCCGGAAAAAAATACAGACAACTTTCAATCTGTTTTGAATTCTGATAATCAGTTAAATAGCAAATCAAATGTGCTTTATGATGCTGGTCCTAGTGATGCATTTGTCCGTGACATAAGTTTGGCTGAGAAACATTCGGAAAATGATGAGCTTTCAGATTTCTTGGATGCTGATCAAAACAGTGGTAGCGTCTTTCTTATCCAGGAGAAATATGATTCGCAGACCTTGCGGGGTGGAGTGTCAAATGCGCCTGTGGTGGCAGACTTAGACATGTCCTTCCTTGAGAAGGAAGTACTGGTGCAGAAGGAATCTATATCTCCAGTAGAAGAGATCTTAGCAGATATTCCAGAAGGAATTTCTGGACAAGATGCTGGTACTGCTGGTGAAGTAAATTATGGTGCTGGGTGTTATAAAAGAAATAGACAGTTGGGGTCTTCAACTTGCAGAAGGTTGACTGATTGGAATCCTCTGATACTTTCTGAAGTTGAACTGTGCCCTGATTCTATCCATCGATATGCACTTGCATCTAATAGGAAGAGCAGGGAACAACTGAAGACAAATGTCAGAAAACATATTGCATATCTTGGATGGAAAATTGAGTGGATGCAACATGCAAATGGTTTTTATCAACAAACGCAATATAGGTACACCTCACCTGAGAAAGAGGGGAAACAGGTCGTTTACAAGTCACTTCGCAAAGTTTGTGAACATATTGAAAAGGACACCAATACGAACTCTTTGTTGTCACAAGATGATCAGAGAAGGATGCATCCTACAACTGGCAGTAATATTTCACATAATGCAATCTTGCCATCTCCTTCAATTGAAGACGCAGTTGAACCTGAATTTTGCCCAGAAGCTGTTTTGAGATATTACTTGCTTCCATTAAAGAAGGGGCTCGGCGATGTTAAAAAAATTATGATACCAAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAATTTTGAGTATCCAACCATAAGAGGAAGAGGAATCACCTACATTTCACCCCAAAATGTGCGTTTTGGTTCACTTCGAGTGGCTTGTGGAGCATGTATAAAAGTATGTCTTCCCCAGTGGATCAGCTCTGGAACGATGTCTCTGGATGGTTTGGGCATAAATGAAGAGACAATGAATCCGGTTGATAGTGATAAACTATTGTATTACGTGTCTCAGTTGCTTCAAAAGGAGCCTGAATTGGCTGATTTAAGTGGGGTGCCAGAAAGTAGATCAACTGGGCATTGCAAGCTCAAACCCTCCAGGAACGTAAAGCCCAGACCACCTAAGCTCCAGAAAAAAGGATTACCTATTCGGTTACAACGATCAAGTAAAAGGGTCCAGAAGGTGTGTGCTCCTTGTCCATCACACCAGAAAGCTCAAAATGTCCTGTCCTGGTTAATCGACTGCAAAGGGTTGTTACCAAGGTCTAAGGTCCAATACCGGGCAAGAGGCACAGGTCATCCTATGGCAGAGGGGCGAATAACTCGTGATGGAATCAAGTGTAGCTGTTGTCGGAAGCTATATAGTCTCAGTGGCTTTGAAGGTCATGCAACTGGTAGTCGTAATTGCAGGTCAGCAGCTGCTAATATTATTTTGGAAAATGGCAAATCACTCCTAGATTTCCAGATGAAGATAATGAATGAGCATCGGGCAAGAGGAACTATAAAAACACCATCCAAAAGTGTATATCAGGAAGAGAATGATGCCATTTGTTCTGTTTGTCACTATGGCGGTGAACTAATATTATGTGATAATTGCCCTTCTTCTTTTCATAAAAGCTGCCTAGGTTTGGAGGATATCCCTGACGGTGACTGGTTTTGCCCATCATGTTGTTGTGGAATTTGCCAACAAAGTAAAACTGATGGGGCTGATGATGAAAATCTTTTGACTTGCAGTCAGTGTGAACATAAATATCATGCTAACTGCTTGGGAAAAAGGCCTGTAGCAATGTCTGGAAGATATCTGAAAAATTGGTTTTGTGGAAAAAGCTGTGAAAAGTTATATGCAGGCCTTCACAAGCTATTAGGAGAACCTGTTGCAGTGGGTGTGAACAATTTAAACTGGACGTTGCTGAAGTATGTTAACTCTGAGAATTGTGATCTTGGGAATGGTAGAAGTAGCCTAGAGGTAGAGAGTTACAGCAAACTCAATGTGGCTCTTTCAGTGATGCATGAATGTTTTGAGCCCTTAAAGGAATCTTACTCTGGCAGGGATCTCATGGAAGATGTTATTTTCAGCAGATGGTCAAAGCTTAATCGATTGAACTTTCAAGGTTTCTATACTGTACTCCTGGAGAGAAATGAAGAAGTGATAACTGTGGCAACTGTTAGGGTCTATGGAGAGAAGGTAGCAGAAGTACCCCTTGTTGGTACCAGATTTCAATATCGCCGCCTTGGAATGTGTCGCATTTTAATGGACGAGCTTGAAAAGAGGCTCATGCTATTAGGGGTGGAGAGGATAGTTTTGCCTGCTGTTCCAAGTGTGCTAGAAACATGGACGACTTCTTTTGGCTTTGCACAGATGACAAATTCTGAGAGATCACAGTTTCTGGACTACACTTTCCTTGACTTTCAGGATACTATCATGTGCCAGAAACTCTTGACCAAGACTCGTCCAGCTTTGGTTTTGTCAACAGAGAGCCATCCAAACCCACATGATGTTTTATCTGTAAGTGGTGGTACTGGTTTTGATCAGTCTAGTGCTGTATCTGAACTATGTCAGGCAGAAGAGAATGACAAAAGTGAGACGCTGGATCTACAAATGGTGGATCCTTTTGCTGGCAGTGAGGATCGTCTTGGTAATGGTGCCCCATGTCCAGTTCACTTGGCGAAGCCAGTAAATTCCGAGGGCGAACAACTGCAGAACAGAAGCATTACAGAATGCTCACTTGAAGATGGCCACTTAAAACAAGTTTCCACCTATAACGCTCCATGTAAGTACTACAAGCGAAGGAAAAATCATGGAAGGATGAGAATTCTCAGTTAA 3786 0.4223 MAVEELESPGRKRKRGSGKRKLVVNDRVEVRSIEDGFLGSWHPGTVIQCGKQKRHVRYDNVLDDNGSNYLVDVVDVPAILDGASSTIYNERGFIRPPPPSKEFGKWDLPFGLCVDVHYQEAWWEGVIFDHCDGMEERSIFFPDLGDEMKIKIDHLRVTHDWSEVTEEWERRGMWVFLELVEECEQDTYVAVSVKQIWYDVRAKEDFDKIRDWTCNVKDLWRDLVLEVINDYFALTLREVFTVFDISKDLLTVALEPESAAPTADIHINPEKNTDNFQSVLNSDNQLNSKSNVLYDAGPSDAFVRDISLAEKHSENDELSDFLDADQNSGSVFLIQEKYDSQTLRGGVSNAPVVADLDMSFLEKEVLVQKESISPVEEILADIPEGISGQDAGTAGEVNYGAGCYKRNRQLGSSTCRRLTDWNPLILSEVELCPDSIHRYALASNRKSREQLKTNVRKHIAYLGWKIEWMQHANGFYQQTQYRYTSPEKEGKQVVYKSLRKVCEHIEKDTNTNSLLSQDDQRRMHPTTGSNISHNAILPSPSIEDAVEPEFCPEAVLRYYLLPLKKGLGDVKKIMIPKARKHLLAEGWNFEYPTIRGRGITYISPQNVRFGSLRVACGACIKVCLPQWISSGTMSLDGLGINEETMNPVDSDKLLYYVSQLLQKEPELADLSGVPESRSTGHCKLKPSRNVKPRPPKLQKKGLPIRLQRSSKRVQKVCAPCPSHQKAQNVLSWLIDCKGLLPRSKVQYRARGTGHPMAEGRITRDGIKCSCCRKLYSLSGFEGHATGSRNCRSAAANIILENGKSLLDFQMKIMNEHRARGTIKTPSKSVYQEENDAICSVCHYGGELILCDNCPSSFHKSCLGLEDIPDGDWFCPSCCCGICQQSKTDGADDENLLTCSQCEHKYHANCLGKRPVAMSGRYLKNWFCGKSCEKLYAGLHKLLGEPVAVGVNNLNWTLLKYVNSENCDLGNGRSSLEVESYSKLNVALSVMHECFEPLKESYSGRDLMEDVIFSRWSKLNRLNFQGFYTVLLERNEEVITVATVRVYGEKVAEVPLVGTRFQYRRLGMCRILMDELEKRLMLLGVERIVLPAVPSVLETWTTSFGFAQMTNSERSQFLDYTFLDFQDTIMCQKLLTKTRPALVLSTESHPNPHDVLSVSGGTGFDQSSAVSELCQAEENDKSETLDLQMVDPFAGSEDRLGNGAPCPVHLAKPVNSEGEQLQNRSITECSLEDGHLKQVSTYNAPCKYYKRRKNHGRMRILS 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0806 1261 ProSiteProfiles Zinc finger PHD-type profile. 835 880 IPR019787 -
Prci8g0806 1261 SMART ring_2 879 934 IPR001841 -
Prci8g0806 1261 SMART ring_2 838 877 IPR001841 -
Prci8g0806 1261 Pfam Tify domain binding domain 759 811 IPR032308 -
Prci8g0806 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 880 934 IPR013083 -
Prci8g0806 1261 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 973 1134 IPR000182 GO:0016747
Prci8g0806 1261 SMART PHD_3 879 931 IPR001965 -
Prci8g0806 1261 SMART PHD_3 837 878 IPR001965 -
Prci8g0806 1261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 828 879 IPR013083 -
Prci8g0806 1261 Gene3D - 985 1134 - -
Prci8g0806 1261 CDD NAT_SF 1029 1089 - -
Prci8g0806 1261 PANTHER PHD FINGER PROTEIN 12 569 1183 IPR042163 GO:0003714|GO:0045892
Prci8g0806 1261 SUPERFAMILY FYVE/PHD zinc finger 824 877 IPR011011 -
Prci8g0806 1261 MobiDBLite consensus disorder prediction 512 536 - -
Prci8g0806 1261 CDD Tudor_Agenet_AtDUF_rpt1_3 22 99 - -
Prci8g0806 1261 MobiDBLite consensus disorder prediction 672 699 - -
Prci8g0806 1261 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1005 1105 IPR016181 -
Prci8g0806 1261 SMART agenet_At_2 20 102 IPR014002 -
Prci8g0806 1261 SMART agenet_At_2 106 163 IPR014002 -
Prci8g0806 1261 Pfam Agenet domain 25 99 IPR008395 -
Prci8g0806 1261 Pfam PHD-finger 837 879 IPR019787 -
Prci8g0806 1261 CDD PHD2_CHD_II 838 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0806 Prci-Chr8 5147369 5155432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0806 31 247 PHD Transcription Factor Family AT5G58610 48.416 1.20e-62 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci8g0806 Agenet 6.2e-17 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0806 - - pcin:129318355 2587.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0806 8 5147369 5155432 Prci8g0806 8 5147369 5155432 ECH