Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0767 ATGGTAAATCGGAAGTTTCAAGAAATGCGAAATCAGGGAATCAAAGATCAAATTCCGGTTCAGAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGGTTGATTGAAAAAACATCAAAGAACCATATACGGTGGAAGGGATATGATGGACTGGGGGCAGGCGAACTGGATGATCAAATTACTAGACTAAAGTCTGAAGTTGAAAGTATATGCTCTGAGGAGTACCAACTTGATGATATTATAAGGAAAAAGCAAGAGCTCCTAAGAACTTTGGAGGAAGATGAAAATCATCAAAAGTACCTTTTTTTGACTGAGGAAGATATTCTTGGCCTTCCATGTTTCCAGGATCAAACACTCATTGCAATCAAGGCACCCCAAGCTAGTTTCATTGAAATTCCTGATCCTGATGAGGATAATGAATTCCGGCAAAGGCAGTACAAAATGATCGTTAGAAGCAGCACTGGACCAATAGATTTGTACCTCTTGAGCAAACACAACGCCAATTATGAGGATGTTAGAGTCAAGCAACCTGCATCGCTAGACCCTTCATGGAACAGTGACCAGGGTGGATTGAAGAGTTCGGAATTACGTTTAGAAAGCCGAGATGCCCAGACAAATCCGTCTCAAAGTTGTAGCTTGCTGGACTCGGAGCCACCTGGCATTCAGAAAATTACGCCAATGGATTTTGATATCGAAGATGACTACTGGTTCCAATCAGATCATGGAGTGACCCTAACGGATTTGTGGGCAAATGAGGAGTCAGTTCACATGGATCAGGTTCTTCGAGATGAAGACGATTGTTCAAATGAGGGTGGGGCGTTCATCGAAAACACCAGCTTCCTGGACAGACGTGGTCAATAG 870 0.4207 MVNRKFQEMRNQGIKDQIPVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYDGLGAGELDDQITRLKSEVESICSEEYQLDDIIRKKQELLRTLEEDENHQKYLFLTEEDILGLPCFQDQTLIAIKAPQASFIEIPDPDEDNEFRQRQYKMIVRSSTGPIDLYLLSKHNANYEDVRVKQPASLDPSWNSDQGGLKSSELRLESRDAQTNPSQSCSLLDSEPPGIQKITPMDFDIEDDYWFQSDHGVTLTDLWANEESVHMDQVLRDEDDCSNEGGAFIENTSFLDRRGQ 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0767 289 Gene3D - 3 52 IPR036388 -
Prci8g0767 289 Gene3D - 56 168 - -
Prci8g0767 289 Pfam E2F/DP family winged-helix DNA-binding domain 14 50 IPR003316 GO:0005667|GO:0006355
Prci8g0767 289 SMART E2F_TDP_2 1 50 IPR003316 GO:0005667|GO:0006355
Prci8g0767 289 SUPERFAMILY "Winged helix" DNA-binding domain 15 51 IPR036390 -
Prci8g0767 289 Coils Coil 80 100 - -
Prci8g0767 289 SUPERFAMILY E2F-DP heterodimerization region 61 167 IPR037241 -
Prci8g0767 289 MobiDBLite consensus disorder prediction 203 222 - -
Prci8g0767 289 Pfam E2F transcription factor CC-MB domain 66 165 IPR032198 GO:0046983
Prci8g0767 289 MobiDBLite consensus disorder prediction 203 219 - -
Prci8g0767 289 CDD E2F_DD 61 168 IPR032198 GO:0046983
Prci8g0767 289 PANTHER TRANSCRIPTION FACTOR E2F 17 258 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0767 Prci-Chr8 4859794 4864594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0767 20 254 E2F-DP Transcription Factor Family AT1G47870 54.894 1.95e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Prci8g0767 E2F_CC-MB 3.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0767 K06620 - qsa:O6P43_016265 326.25