Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0751 ATGACAATCGCCCAGGGAAAAAAGAGAAAGGAGGAGAAACTTTACTCCATTTCGATTTTCGATATTAGTTTTATTCAAGATCGGTTAATCAACAAAGAACGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGTATTGATAAAGGCAGCGAGGTTCAGTACTCTGATCAGGCAGTATTAGCAAATCTCGATTGGGGTATAGAAGCCCTTGAAGAAGCTATCAATACCTTTAATATGGAAACTAAGATTGCCCGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCCATGTTGAATTCCAATCGAAAAACTGCTGGGGTGCCCAATTTCTACCTCTCAGCTTGGGCTCACCTCAATCTATCATACCTATGGAAGTTGCGAAACAATATTCAAAATTCAATTTGCCATGCTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCACGAATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGAGCTCCATTGTAGGTTGGTATTCAGAGGAGAGGCACAGGCTCATGATGGAAGTCATACCTGACTCTTCAGATTTGTCCTTTACAGCTGATTTTGGTCAATTCTTCAATGAGTCTTTGATATATACTATGAGGCCACATCAATTAGAGAAATTGCAAAACCTGGAGAAGCTTTATGCAGAGTCATTGAATGAAAACACGAGGCTTTATGCAAAGTACTATAAGGATTGCATCAGCTCTGATTCATCCTCCAGCAAGAAGGTTCCAATGTTACCGATTGCTGAGCCGCCCATGACACCTCTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTAAAATCTAAAGATGATGCAAATGAAACTATCAGGGGAGATGTGACTTCTAGCCATTCACAAAAGGCAGAGAAGTCATCATCTACATGGGGTCATCAGGAGGGTACCATTGGAGAAGAGTATGATGATTCGGATTACGACCTCAATGATTCATACATTGAGCCAAATGGGAAAACTCAAACTATTGTGTCTCCTAGAATTAACAATATCAAGGATGTGGATATTGAGCCAAAAGTACATCAATCAAACCGGAAGAATCAAATATATTCTCCTCCCGTTTTTTCTCCCTTGGATTCTCCAAGAGTTCCTTCGAAAAATTCATCTTCAATTCATGAGACACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTAGGCGTTTTTCAGACTCAAGTATTTCCAACTCTTCTCCATTATCTCCACATATGAGTACTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAGTAATGGGTGTGAAGAACACTCAGAGGAAAAACCATTACTCAGAAAAGATGATTAATCATGGGAAAGAGAATACCCTCTCATTCAATGACAATTCCCTTTATGAGAGCCATGAGGGAAATAGCAACAATAATTTATCACTGAAATCGGGGAAGCGTATAGTTCAATCAAGACCACCCAAAGATTTCGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAATGGCTCAAAACAGGAAACACAACATGTCCCATCACACGGCAATCTCTCTCTGCAAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACAACATGGAAAGAACAACATCCAGAATTAGCTCAGGAGTTTTCAAACTCAGACACATTACAGGTTTCTCTAAATTCTCCATCTGTGAAAGATATTCCAGTGGTCTCTAATATGCACAAGACAGCTGACTCACCAGCTCATAAGAATGTATACGATTATATTAGTCAAAGGAGCGAAAGATTTATGCAGGTCTCTGTTGCATCGTCACCAACTAGTGTAATATCTCAAGCAGCAGTTGAAACAATTATGAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACTCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAGAACCAATTGTTATAAATGGTTTAGTGGAAATACTTTTAGCTTCTCTGAATAGAGAAGTTTTGAGAACGTCAATTTATATCCTGTCTGAGCTAATTTTTGTGGATGAAAGTGTTGGAGAAATACTGATTAATGTTGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGTTGAGGCTGCTGTTCTAATGTACCAACTGAGGCCGGTCTATGATCAACTCTCTGCTCATGAACTTATACCTTCCATTGTCCAGCTGATCCAGAACAAAAATGGGGAGTTGGATGATCTTCGGTTCCTCATTGATCCTAGAGATGCAGCTGTAGCCATTCTTGAGCAGATTTTATTAGGAGGGAATGAATATAGCAGGCCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTTTGTTGTTTCCATACTTCTATGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCAAACAGAATTGAATTATCTCCTGTCCTTGAATTGTTTCATTCTGGAAATGACAGTGTCAGAGTGATATGTGTGGAGTTTCTCTCACAGCTTGTGCAATTGCATAGGAGGACACTGTGCAACAAGATATTGCAGATTATCAAGGACGAGGGAGCATTTAGTACTATGCATACCTTTCTTGTGTATCTTCAGATGGCTCCTATGGAACATCAACTTGCCGTTGCTAGTCTTTTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTATAGAGGCCTTGATAGAAGCACTTTGGCGAAAGGACTTCTCAAATACTCAGATTAAGGCTTTAGATGCTTTACTGTTTCTTATCGGGCATGTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGACTGCAGGATTTGACCAACCTTACAATGCTCTAATGAAAGTTGAACAGTTGGAAAAATGTGACAATGATTCGAGGGAAACAATGGAGGATGAAGAAAATGCTACTAGTTCGTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAGGAGTACTTCTTTAAAGACGGCAAAATCATGCCTTGTCATTGCCACATGGCTCACACACATGCTCTCAACCATTCCTGATACTGGTATAAGGGATGTTGCTCGAATATCCTTGCTTGAAGAACTTATAAATATCCTCCAATCATCCAAGAACCTCGAGGAAATGATCTTGGCTACCCTTGCTTTGAAGACTTTTATTGGCGATCCAACACTTGGAGCTTATGCCAAAAGCATCTATAAAACCTTGACAAAGTTGAAGAAGTATTCTGTGGTGGCAGCCGACATTATGAAAGCCTTACTGAACTTAAAATCCGTTGATGTGACGGCCTTGTGGAGTTGTAAGGAAGTCGTTGAGCTAGATTTGAGCTCGAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTAAGTGGGCACTCTGATGGAACTTTGAAGGTTTGGGATGCGAGGAAGAGGGTATTGAGATTGATTCAAGAAACTCATGAGCACACTAAAGCTGTAACATGCCTCTACTCTTCAGGCGATAAAATCTACAGTGGCTCCTTGGACAAAACCATCCGGGTATGGATAATGAAATATGATGAGATTCAGTGCATTCGAGTTCATGATATCAAAGAGGTAGTGTATGAATTGATAGCAAATGATGAATTGGCATGCTACGTAAGTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCAAATCCTCCAAAACTAATTAATTTCAATAAATATGTGAAATGCCTTGCAATGTTTGGGGACAAACTATATTGTGGTTGCTCTGGTTACAGTGTCCAGGAGGTGGACTTGTCAAACTATGCATCAAATACAATTTTATCCGGTACAAGAAAATTGCTGGGAAAACAAACCATTCACTCACTTCTAATTTATGACGATTTTCTTATTGCTGGTGGTTCTTTGGTTGATGCAACTGCGGGAAAGATATTATCACTATCATCCAAAGCAGTGGTGGGGTCACTCTCAACAGGACTAGACATCCACCGCATGGCCATGAACAATGACTTTGTATTTACGGGCACTAAATGTGGCACTATAGAGGTATGGCTAAAACATAAGTTGAGCAGGGTTGCTTCCATCAAAATGGCCAGTGGTCACACGAAAATCACGTCGTTAGTATCAGATACTGATGGTACGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATTCAGGTTTGGGCTTTGGATTAG 4461 0.4013 MTIAQGKKRKEEKLYSISIFDISFIQDRLINKERRIQHKEQCAERLAAEDESIDKGSEVQYSDQAVLANLDWGIEALEEAINTFNMETKIARLDYAEKMLQVCAMLNSNRKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNSICHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFGQFFNESLIYTMRPHQLEKLQNLEKLYAESLNENTRLYAKYYKDCISSDSSSSKKVPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPVLKSKDDANETIRGDVTSSHSQKAEKSSSTWGHQEGTIGEEYDDSDYDLNDSYIEPNGKTQTIVSPRINNIKDVDIEPKVHQSNRKNQIYSPPVFSPLDSPRVPSKNSSSIHETHTKGEPKSLRLLSRRFSDSSISNSSPLSPHMSTDHSISSEDSDNEVMGVKNTQRKNHYSEKMINHGKENTLSFNDNSLYESHEGNSNNNLSLKSGKRIVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLSASILPKTNYVLKRLITTWKEQHPELAQEFSNSDTLQVSLNSPSVKDIPVVSNMHKTADSPAHKNVYDYISQRSERFMQVSVASSPTSVISQAAVETIMNCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKSDPQIHSYLSEPIVINGLVEILLASLNREVLRTSIYILSELIFVDESVGEILINVDSDFDCLATLLKNGLVEAAVLMYQLRPVYDQLSAHELIPSIVQLIQNKNGELDDLRFLIDPRDAAVAILEQILLGGNEYSRPLNALSVISANGIPILVKYMERMEGRRFVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRVICVEFLSQLVQLHRRTLCNKILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAIEALIEALWRKDFSNTQIKALDALLFLIGHVTSSGKSYTEAWLLKTAGFDQPYNALMKVEQLEKCDNDSRETMEDEENATSSWQKRVAFVLCNHEKGSIFKALEECLRSTSLKTAKSCLVIATWLTHMLSTIPDTGIRDVARISLLEELINILQSSKNLEEMILATLALKTFIGDPTLGAYAKSIYKTLTKLKKYSVVAADIMKALLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTLKVWDARKRVLRLIQETHEHTKAVTCLYSSGDKIYSGSLDKTIRVWIMKYDEIQCIRVHDIKEVVYELIANDELACYVSQGTGAKVYNWSNPPKLINFNKYVKCLAMFGDKLYCGCSGYSVQEVDLSNYASNTILSGTRKLLGKQTIHSLLIYDDFLIAGGSLVDATAGKILSLSSKAVVGSLSTGLDIHRMAMNNDFVFTGTKCGTIEVWLKHKLSRVASIKMASGHTKITSLVSDTDGTMLFVGSSDGKIQVWALD 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0751 1486 SUPERFAMILY WD40 repeat-like 1217 1485 IPR036322 GO:0005515
Prci8g0751 1486 MobiDBLite consensus disorder prediction 308 460 - -
Prci8g0751 1486 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Prci8g0751 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 1485 - -
Prci8g0751 1486 MobiDBLite consensus disorder prediction 352 366 - -
Prci8g0751 1486 MobiDBLite consensus disorder prediction 425 447 - -
Prci8g0751 1486 SUPERFAMILY RING/U-box 507 587 - -
Prci8g0751 1486 MobiDBLite consensus disorder prediction 312 333 - -
Prci8g0751 1486 SMART WD40_4 1238 1275 IPR001680 GO:0005515
Prci8g0751 1486 SMART WD40_4 1404 1440 IPR001680 GO:0005515
Prci8g0751 1486 SMART WD40_4 1195 1233 IPR001680 GO:0005515
Prci8g0751 1486 SMART WD40_4 1443 1484 IPR001680 GO:0005515
Prci8g0751 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 598 IPR013083 -
Prci8g0751 1486 SUPERFAMILY ARM repeat 647 802 IPR016024 -
Prci8g0751 1486 Coils Coil 224 244 - -
Prci8g0751 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1274 IPR001680 GO:0005515
Prci8g0751 1486 Pfam WD domain, G-beta repeat 1245 1274 IPR001680 GO:0005515
Prci8g0751 1486 Pfam WD domain, G-beta repeat 1454 1483 IPR001680 GO:0005515
Prci8g0751 1486 Gene3D - 665 941 IPR011989 -
Prci8g0751 1486 Gene3D - 1184 1486 IPR015943 GO:0005515
Prci8g0751 1486 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Prci8g0751 1486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1452 1486 - -
Prci8g0751 1486 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Prci8g0751 1486 SUPERFAMILY ARM repeat 778 1149 IPR016024 -
Prci8g0751 1486 CDD RING-Ubox_PUB 516 568 IPR045210 -
Prci8g0751 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1452 1486 IPR001680 GO:0005515
Prci8g0751 1486 MobiDBLite consensus disorder prediction 410 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0751 Prci-Chr8 4785079 4792574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0751 497 910 U-box Gene Family AT1G23030 24.941 3.99e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0751 - - gmx:100776142 2123.21