Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0750 ATGACAATCGCCCAGGGAAAAAAGAGAAAGGAGGAGAAACTTTACTCCATTTCGATTTTCGATATTAGTTTTATTCAAGATCGGTTAATCAACAAAGAACGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGTATTGATAAAGGCAGCGAGGTTCAGTACTCTGATCAGGCAGTATTAGCAAATCTCGATTGGGGTATAGAAGCCCTTGAAGAAGCTATCAATACCTTTAATATGGAAACTAAGATTGCCCGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCCATGTTGAATTCCAATCGAAAAACTGCTGGGGTGCCCAATTTCTACCTCTCAGCTTGGGCTCACCTCAATCTATCATACCTATGGAAGTTGCGAAACAATATTCAAAATTCAATTTGCCATGCTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCACGAATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGAGCTCCATTGTAGGTTGGTATTCAGAGGAGAGGCACAGGCTCATGATGGAAGTCATACCTGACTCTTCAGATTTGTCCTTTACAGCTGATTTTGGTCAATTCTTCAATGAGTCTTTGATATATACTATGAGGCCACATCAATTAGAGAAATTGCAAAACCTGGAGAAGCTTTATGCAGAGTCATTGAATGAAAACACGAGGCTTTATGCAAAGTACTATAAGGATTGCATCAGCTCTGATTCATCCTCCAGCAAGAAGGTTCCAATGTTACCGATTGCTGAGCCGCCCATGACACCTCTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTAAAATCTAAAGATGATGCAAATGAAACTATCAGGGGAGATGTGACTTCTAGCCATTCACAAAAGGCAGAGAAGTCATCATCTACATGGGGTCATCAGGAGGGTACCATTGGAGAAGAGTATGATGATTCGGATTACGACCTCAATGATTCATACATTGAGCCAAATGGGAAAACTCAAACTATTGTGTCTCCTAGAATTAACAATATCAAGGATGTGGATATTGAGCCAAAAGTACATCAATCAAACCGGAAGAATCAAATATATTCTCCTCCCGTTTTTTCTCCCTTGGATTCTCCAAGAGTTCCTTCGAAAAATTCATCTTCAATTCATGAGACACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTAGGCGTTTTTCAGACTCAAGTATTTCCAACTCTTCTCCATTATCTCCACATATGAGTACTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAGTAATGGGTGTGAAGAACACTCAGAGGAAAAACCATTACTCAGAAAAGATGATTAATCATGGGAAAGAGAATACCCTCTCATTCAATGACAATTCCCTTTATGAGAGCCATGAGGGAAATAGCAACAATAATTTATCACTGAAATCGGGGAAGCGTATAGTTCAATCAAGACCACCCAAAGATTTCGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAATGGCTCAAAACAGGAAACACAACATGTCCCATCACACGGCAATCTCTCTCTGCAAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACAACATGGAAAGAACAACATCCAGAATTAGCTCAGGAGTTTTCAAACTCAGACACATTACAGGTTTCTCTAAATTCTCCATCTGTGAAAGATATTCCAGTGGTCTCTAATATGCACAAGACAGCTGACTCACCAGCTCATAAGAATGTATACGATTATATTAGTCAAAGGAGCGAAAGATTTATGCAGGTCTCTGTTGCATCGTCACCAACTAGTGTAATATCTCAAGCAGCAGTTGAAACAATTATGAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACTCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAGAACCAATTGTTATAAATGGTTTAGTGGAAATACTTTTAGCTTCTCTGAATAGAGAAGTTTTGAGAACGTCAATTTATATCCTGTCTGAGCTAATTTTTGTGGATGAAAGTGTTGGAGAAATACTGATTAATGTTGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGTTGAGGCTGCTGTTCTAATGTACCAACTGAGGCCGGTCTATGATCAACTCTCTGCTCATGAACTTATACCTTCCATTGTCCAGCTGATCCAGAACAAAAATGGGGAGTTGGATGATCTTCGGTTCCTCATTGATCCTAGAGATGCAGCTGTAGCCATTCTTGAGCAGATTTTATTAGGAGGGAATGAATATAGCAGGCCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTTTGTTGTTTCCATACTTCTATGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCAAACAGAATTGAATTATCTCCTGTCCTTGAATTGTTTCATTCTGGAAATGACAGTGTCAGAGTGATATGTGTGGAGTTTCTCTCACAGCTTGTGCAATTGCATAGGAGGACACTGTGCAACAAGATATTGCAGATTATCAAGGACGAGGGAGCATTTAGTACTATGCATACCTTTCTTGTGTATCTTCAGATGGCTCCTATGGAACATCAACTTGCCGTTGCTAGTCTTTTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTATAGAGGCCTTGATAGAAGCACTTTGGCGAAAGGACTTCTCAAATACTCAGATTAAGGCTTTAGATGCTTTACTGTTTCTTATCGGGCATGTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGACTGCAGGATTTGACCAACCTTACAATGCTCTAATGAAAGTTGAACAGTTGGAAAAATGTGACAATGATTCGAGGGAAACAATGGAGGATGAAGAAAATGCTACTAGTTCGTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAGGAGTACTTCTTTAAAGACGGCAAAATCATGCCTTGTCATTGCCACATGGCTCACACACATGCTCTCAACCATTCCTGATACTGGTATAAGGGATGTTGCTCGAATATCCTTGCTTGAAGAACTTATAAATATCCTCCAATCATCCAAGAACCTCGAGGAAATGATCTTGGCTACCCTTGCTTTGAAGACTTTTATTGGCGATCCAATTGCTCTTGAAGCACTTGGAGCTTATGCCAAAAGCATCTATAAAACCTTGACAAAGTTGAAGAAGTATTCTGTGGTGGCAGCCGACATTATGAAAGCCTTACTGAACTTAAAATCCGTTGATGTGACGGCCTTGTGGAGTTGTAAGGAAGTCGTTGAGCTAGATTTGAGCTCGAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTAAGTGGGCACTCTGATGGAACTTTGAAGGTTTGGGATGCGAGGAAGAGGGTATTGAGATTGATTCAAGAAACTCATGAGCACACTAAAGCTGTAACATGCCTCTACTCTTCAGGCGATAAAATCTACAGTGGCTCCTTGGACAAAACCATCCGGGTATGGATAATGAAATATGATGAGATTCAGTGCATTCGAGTTCATGATATCAAAGAGGTAGTGTATGAATTGATAGCAAATGATGAATTGGCATGCTACGTAAGTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCAAATCCTCCAAAACTAATTAATTTCAATAAATATGTGAAATGCCTTGCAATGTTTGGGGACAAACTATATTGTGGTTGCTCTGGTTACAGTGTCCAGGAGGTGGACTTGTCAAACTATGCATCAAATACAATTTTATCCGGTACAAGAAAATTGCTGGGAAAACAAACCATTCACTCACTTCTAATTTATGACGATTTTCTTATTGCTGGTGGTTCTTTGGTTGATGCAACTGCGGGAAAGATATTATCACTATCATCCAAAGCAGTGGTGGGGTCACTCTCAACAGGACTAGACATCCACCGCATGGCCATGAACAATGACTTTGTATTTACGGGCACTAAATGTGGCACTATAGAGGTATGGCTAAAACATAAGTTGAGCAGGGTTGCTTCCATCAAAATGGCCAGTGGTCACACGAAAATCACGTCGTTAGTATCAGATACTGATGGTACGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATTCAGGTTTGGGCTTTGGATTAG 4473 0.4013 MTIAQGKKRKEEKLYSISIFDISFIQDRLINKERRIQHKEQCAERLAAEDESIDKGSEVQYSDQAVLANLDWGIEALEEAINTFNMETKIARLDYAEKMLQVCAMLNSNRKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNSICHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFGQFFNESLIYTMRPHQLEKLQNLEKLYAESLNENTRLYAKYYKDCISSDSSSSKKVPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPVLKSKDDANETIRGDVTSSHSQKAEKSSSTWGHQEGTIGEEYDDSDYDLNDSYIEPNGKTQTIVSPRINNIKDVDIEPKVHQSNRKNQIYSPPVFSPLDSPRVPSKNSSSIHETHTKGEPKSLRLLSRRFSDSSISNSSPLSPHMSTDHSISSEDSDNEVMGVKNTQRKNHYSEKMINHGKENTLSFNDNSLYESHEGNSNNNLSLKSGKRIVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLSASILPKTNYVLKRLITTWKEQHPELAQEFSNSDTLQVSLNSPSVKDIPVVSNMHKTADSPAHKNVYDYISQRSERFMQVSVASSPTSVISQAAVETIMNCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKSDPQIHSYLSEPIVINGLVEILLASLNREVLRTSIYILSELIFVDESVGEILINVDSDFDCLATLLKNGLVEAAVLMYQLRPVYDQLSAHELIPSIVQLIQNKNGELDDLRFLIDPRDAAVAILEQILLGGNEYSRPLNALSVISANGIPILVKYMERMEGRRFVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRVICVEFLSQLVQLHRRTLCNKILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAIEALIEALWRKDFSNTQIKALDALLFLIGHVTSSGKSYTEAWLLKTAGFDQPYNALMKVEQLEKCDNDSRETMEDEENATSSWQKRVAFVLCNHEKGSIFKALEECLRSTSLKTAKSCLVIATWLTHMLSTIPDTGIRDVARISLLEELINILQSSKNLEEMILATLALKTFIGDPIALEALGAYAKSIYKTLTKLKKYSVVAADIMKALLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTLKVWDARKRVLRLIQETHEHTKAVTCLYSSGDKIYSGSLDKTIRVWIMKYDEIQCIRVHDIKEVVYELIANDELACYVSQGTGAKVYNWSNPPKLINFNKYVKCLAMFGDKLYCGCSGYSVQEVDLSNYASNTILSGTRKLLGKQTIHSLLIYDDFLIAGGSLVDATAGKILSLSSKAVVGSLSTGLDIHRMAMNNDFVFTGTKCGTIEVWLKHKLSRVASIKMASGHTKITSLVSDTDGTMLFVGSSDGKIQVWALD 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0750 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Prci8g0750 1490 Gene3D - 1194 1386 IPR015943 GO:0005515
Prci8g0750 1490 MobiDBLite consensus disorder prediction 308 460 - -
Prci8g0750 1490 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Prci8g0750 1490 SUPERFAMILY WD40 repeat-like 1221 1489 IPR036322 GO:0005515
Prci8g0750 1490 Gene3D - 665 941 IPR011989 -
Prci8g0750 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 1489 - -
Prci8g0750 1490 MobiDBLite consensus disorder prediction 352 366 - -
Prci8g0750 1490 MobiDBLite consensus disorder prediction 425 447 - -
Prci8g0750 1490 SUPERFAMILY RING/U-box 507 587 - -
Prci8g0750 1490 Pfam WD domain, G-beta repeat 1249 1278 IPR001680 GO:0005515
Prci8g0750 1490 Pfam WD domain, G-beta repeat 1458 1487 IPR001680 GO:0005515
Prci8g0750 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1278 IPR001680 GO:0005515
Prci8g0750 1490 MobiDBLite consensus disorder prediction 312 333 - -
Prci8g0750 1490 Gene3D - 1387 1490 IPR015943 GO:0005515
Prci8g0750 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 598 IPR013083 -
Prci8g0750 1490 SMART WD40_4 1408 1444 IPR001680 GO:0005515
Prci8g0750 1490 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Prci8g0750 1490 SMART WD40_4 1447 1488 IPR001680 GO:0005515
Prci8g0750 1490 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Prci8g0750 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Prci8g0750 1490 Coils Coil 224 244 - -
Prci8g0750 1490 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Prci8g0750 1490 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Prci8g0750 1490 CDD RING-Ubox_PUB 516 568 IPR045210 -
Prci8g0750 1490 MobiDBLite consensus disorder prediction 410 424 - -
Prci8g0750 1490 SUPERFAMILY ARM repeat 653 1188 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0750 Prci-Chr8 4785079 4792574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0750 497 910 U-box Gene Family AT1G23030 24.941 4.89e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0750 - - gmx:100776142 2134.76