Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0749 ATGAACCAAAGGGATATTGTTAGATTCTTGACTACAACTATCTATAGTTTTATTCAAGATCGGTTAATCAACAAAGAACGAAGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGTATTGATAAAGGCAGCGAGGTTCAGTACTCTGATCAGGCAGTATTAGCAAATCTCGATTGGGGTATAGAAGCCCTTGAAGAAGCTATCAATACCTTTAATATGGAAACTAAGATTGCCCGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCCATGTTGAATTCCAATCGAAAAACTGCTGGGGTGCCCAATTTCTACCTCTCAGCTTGGGCTCACCTCAATCTATCATACCTATGGAAGTTGCGAAACAATATTCAAAATTCAATTTGCCATGCTCTTGAGATGTTCATCGTTGACCCTTTTTTCTCACGAATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGAGCTCCATTGTAGGTTGGTATTCAGAGGAGAGGCACAGGCTCATGATGGAAGTCATACCTGACTCTTCAGATTTGTCCTTTACAGCTGATTTTGGTCAATTCTTCAATGAGTCTTTGATATATACTATGAGGCCACATCAATTAGAGAAATTGCAAAACCTGGAGAAGCTTTATGCAGAGTCATTGAATGAAAACACGAGGCTTTATGCAAAGTACTATAAGGATTGCATCAGCTCTGATTCATCCTCCAGCAAGAAGGTTCCAATGTTACCGATTGCTGAGCCGCCCATGACACCTCTGCATGAGTTGAGCTGCTCCATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTAAAATCTAAAGATGATGCAAATGAAACTATCAGGGGAGATGTGACTTCTAGCCATTCACAAAAGGCAGAGAAGTCATCATCTACATGGGGTCATCAGGAGGGTACCATTGGAGAAGAGTATGATGATTCGGATTACGACCTCAATGATTCATACATTGAGCCAAATGGGAAAACTCAAACTATTGTGTCTCCTAGAATTAACAATATCAAGGATGTGGATATTGAGCCAAAAGTACATCAATCAAACCGGAAGAATCAAATATATTCTCCTCCCGTTTTTTCTCCCTTGGATTCTCCAAGAGTTCCTTCGAAAAATTCATCTTCAATTCATGAGACACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTAGGCGTTTTTCAGACTCAAGTATTTCCAACTCTTCTCCATTATCTCCACATATGAGTACTGATCACAGCATCAGCTCAGAAGATTCTGATAACGAAGTAATGGGTGTGAAGAACACTCAGAGGAAAAACCATTACTCAGAAAAGATGATTAATCATGGGAAAGAGAATACCCTCTCATTCAATGACAATTCCCTTTATGAGAGCCATGAGGGAAATAGCAACAATAATTTATCACTGAAATCGGGGAAGCGTATAGTTCAATCAAGACCACCCAAAGATTTCGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGTCAGACATATGAAAGAAAAGCAATTCAGGAATGGCTCAAAACAGGAAACACAACATGTCCCATCACACGGCAATCTCTCTCTGCAAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACAACATGGAAAGAACAACATCCAGAATTAGCTCAGGAGTTTTCAAACTCAGACACATTACAGGTTTCTCTAAATTCTCCATCTGTGAAAGATATTCCAGTGGTCTCTAATATGCACAAGACAGCTGACTCACCAGCTCATAAGAATGTATACGATTATATTAGTCAAAGGAGCGAAAGATTTATGCAGGTCTCTGTTGCATCGTCACCAACTAGTGTAATATCTCAAGCAGCAGTTGAAACAATTATGAATTGTTTGAAACCTTATATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACTCAAAGAGTGATCCTCAGATTCATTCTTATTTATCAGAACCAATTGTTATAAATGGTTTAGTGGAAATACTTTTAGCTTCTCTGAATAGAGAAGTTTTGAGAACGTCAATTTATATCCTGTCTGAGCTAATTTTTGTGGATGAAAGTGTTGGAGAAATACTGATTAATGTTGATTCTGATTTTGATTGCTTGGCTACTCTACTTAAGAATGGTTTGGTTGAGGCTGCTGTTCTAATGTACCAACTGAGGCCGGTCTATGATCAACTCTCTGCTCATGAACTTATACCTTCCATTGTCCAGCTGATCCAGAACAAAAATGGGGAGTTGGATGATCTTCGGTTCCTCATTGATCCTAGAGATGCAGCTGTAGCCATTCTTGAGCAGATTTTATTAGGAGGGAATGAATATAGCAGGCCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGAATTCCAATCTTGGTTAAGTATATGGAAAGGATGGAAGGAAGGAGGTTTGTTGTTTCCATACTTCTATGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCAAACAGAATTGAATTATCTCCTGTCCTTGAATTGTTTCATTCTGGAAATGACAGTGTCAGAGTGATATGTGTGGAGTTTCTCTCACAGCTTGTGCAATTGCATAGGAGGACACTGTGCAACAAGATATTGCAGATTATCAAGGACGAGGGAGCATTTAGTACTATGCATACCTTTCTTGTGTATCTTCAGATGGCTCCTATGGAACATCAACTTGCCGTTGCTAGTCTTTTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTATAGAGGCCTTGATAGAAGCACTTTGGCGAAAGGACTTCTCAAATACTCAGATTAAGGCTTTAGATGCTTTACTGTTTCTTATCGGGCATGTCACTTCTTCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGACTGCAGGATTTGACCAACCTTACAATGCTCTAATGAAAGTTGAACAGTTGGAAAAATGTGACAATGATTCGAGGGAAACAATGGAGGATGAAGAAAATGCTACTAGTTCGTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAGGAGTACTTCTTTAAAGACGGCAAAATCATGCCTTGTCATTGCCACATGGCTCACACACATGCTCTCAACCATTCCTGATACTGGTATAAGGGATGTTGCTCGAATATCCTTGCTTGAAGAACTTATAAATATCCTCCAATCATCCAAGAACCTCGAGGAAATGATCTTGGCTACCCTTGCTTTGAAGACTTTTATTGGCGATCCAATTGCTCTTGAAGCACTTGGAGCTTATGCCAAAAGCATCTATAAAACCTTGACAAAGTTGAAGAAGTATTCTGTGGTGGCAGCCGACATTATGAAAGCCTTACTGAACTTAAAATCCGTTGATGTGACGGCCTTGTGGAGTTGTAAGGAAGTCGTTGAGCTAGATTTGAGCTCGAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTAAGTGGGCACTCTGATGGAACTTTGAAGGTTTGGGATGCGAGGAAGAGGGTATTGAGATTGATTCAAGAAACTCATGAGCACACTAAAGCTGTAACATGCCTCTACTCTTCAGGCGATAAAATCTACAGTGGCTCCTTGGACAAAACCATCCGGGTATGGATAATGAAATATGATGAGATTCAGTGCATTCGAGTTCATGATATCAAAGAGGTAGTGTATGAATTGATAGCAAATGATGAATTGGCATGCTACGTAAGTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCAAATCCTCCAAAACTAATTAATTTCAATAAATATGTGAAATGCCTTGCAATGTTTGGGGACAAACTATATTGTGGTTGCTCTGGTTACAGTGTCCAGGAGGTGGACTTGTCAAACTATGCATCAAATACAATTTTATCCGGTACAAGAAAATTGCTGGGAAAACAAACCATTCACTCACTTCTAATTTATGACGATTTTCTTATTGCTGGTGGTTCTTTGGTTGATGCAACTGCGGGAAAGATATTATCACTATCATCCAAAGCAGTGGTGGGGTCACTCTCAACAGGACTAGACATCCACCGCATGGCCATGAACAATGACTTTGTATTTACGGGCACTAAATGTGGCACTATAGAGGTATGGCTAAAACATAAGTTGAGCAGGGTTGCTTCCATCAAAATGGCCAGTGGTCACACGAAAATCACGTCGTTAGTATCAGATACTGATGGTACGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATTCAGGTTTGGGCTTTGGATTAG 4452 0.4007 MNQRDIVRFLTTTIYSFIQDRLINKERRIQHKEQCAERLAAEDESIDKGSEVQYSDQAVLANLDWGIEALEEAINTFNMETKIARLDYAEKMLQVCAMLNSNRKTAGVPNFYLSAWAHLNLSYLWKLRNNIQNSICHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFGQFFNESLIYTMRPHQLEKLQNLEKLYAESLNENTRLYAKYYKDCISSDSSSSKKVPMLPIAEPPMTPLHELSCSIPDYVKFGPILPKSAGFSPVLKSKDDANETIRGDVTSSHSQKAEKSSSTWGHQEGTIGEEYDDSDYDLNDSYIEPNGKTQTIVSPRINNIKDVDIEPKVHQSNRKNQIYSPPVFSPLDSPRVPSKNSSSIHETHTKGEPKSLRLLSRRFSDSSISNSSPLSPHMSTDHSISSEDSDNEVMGVKNTQRKNHYSEKMINHGKENTLSFNDNSLYESHEGNSNNNLSLKSGKRIVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLSASILPKTNYVLKRLITTWKEQHPELAQEFSNSDTLQVSLNSPSVKDIPVVSNMHKTADSPAHKNVYDYISQRSERFMQVSVASSPTSVISQAAVETIMNCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKSDPQIHSYLSEPIVINGLVEILLASLNREVLRTSIYILSELIFVDESVGEILINVDSDFDCLATLLKNGLVEAAVLMYQLRPVYDQLSAHELIPSIVQLIQNKNGELDDLRFLIDPRDAAVAILEQILLGGNEYSRPLNALSVISANGIPILVKYMERMEGRRFVVSILLCCMQAEKSCRSLIANRIELSPVLELFHSGNDSVRVICVEFLSQLVQLHRRTLCNKILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAIEALIEALWRKDFSNTQIKALDALLFLIGHVTSSGKSYTEAWLLKTAGFDQPYNALMKVEQLEKCDNDSRETMEDEENATSSWQKRVAFVLCNHEKGSIFKALEECLRSTSLKTAKSCLVIATWLTHMLSTIPDTGIRDVARISLLEELINILQSSKNLEEMILATLALKTFIGDPIALEALGAYAKSIYKTLTKLKKYSVVAADIMKALLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTLKVWDARKRVLRLIQETHEHTKAVTCLYSSGDKIYSGSLDKTIRVWIMKYDEIQCIRVHDIKEVVYELIANDELACYVSQGTGAKVYNWSNPPKLINFNKYVKCLAMFGDKLYCGCSGYSVQEVDLSNYASNTILSGTRKLLGKQTIHSLLIYDDFLIAGGSLVDATAGKILSLSSKAVVGSLSTGLDIHRMAMNNDFVFTGTKCGTIEVWLKHKLSRVASIKMASGHTKITSLVSDTDGTMLFVGSSDGKIQVWALD 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0749 1483 Pfam WD domain, G-beta repeat 1242 1271 IPR001680 GO:0005515
Prci8g0749 1483 Pfam WD domain, G-beta repeat 1451 1480 IPR001680 GO:0005515
Prci8g0749 1483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1482 - -
Prci8g0749 1483 CDD RING-Ubox_PUB 509 561 IPR045210 -
Prci8g0749 1483 Gene3D - 1180 1483 IPR015943 GO:0005515
Prci8g0749 1483 MobiDBLite consensus disorder prediction 403 417 - -
Prci8g0749 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 591 IPR013083 -
Prci8g0749 1483 SUPERFAMILY RING/U-box 500 580 - -
Prci8g0749 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1449 1483 IPR001680 GO:0005515
Prci8g0749 1483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1449 1483 - -
Prci8g0749 1483 ProSiteProfiles U-box domain profile. 507 582 IPR003613 GO:0004842|GO:0016567
Prci8g0749 1483 SMART WD40_4 1192 1230 IPR001680 GO:0005515
Prci8g0749 1483 SMART WD40_4 1235 1272 IPR001680 GO:0005515
Prci8g0749 1483 SMART WD40_4 1440 1481 IPR001680 GO:0005515
Prci8g0749 1483 SMART WD40_4 1401 1437 IPR001680 GO:0005515
Prci8g0749 1483 MobiDBLite consensus disorder prediction 301 453 - -
Prci8g0749 1483 Gene3D - 658 934 IPR011989 -
Prci8g0749 1483 SMART Ubox_2 511 575 IPR003613 GO:0004842|GO:0016567
Prci8g0749 1483 MobiDBLite consensus disorder prediction 345 359 - -
Prci8g0749 1483 MobiDBLite consensus disorder prediction 418 440 - -
Prci8g0749 1483 ProSiteProfiles Trp-Asp (WD) repeats profile. 1242 1271 IPR001680 GO:0005515
Prci8g0749 1483 MobiDBLite consensus disorder prediction 305 326 - -
Prci8g0749 1483 SUPERFAMILY WD40 repeat-like 1214 1482 IPR036322 GO:0005515
Prci8g0749 1483 Pfam U-box domain 509 579 IPR003613 GO:0004842|GO:0016567
Prci8g0749 1483 SUPERFAMILY ARM repeat 646 1181 IPR016024 -
Prci8g0749 1483 Coils Coil 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0749 Prci-Chr8 4784968 4792574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0749 490 903 U-box Gene Family AT1G23030 24.941 5.12e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0749 - - gmx:100776142 2157.1