Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0720 ATGACTCAAGATGTTGAGATGAAAGATCACACAACCCCTTCGCATTCTGTTTCTTCAGCTGTTCCATCTACTCTGCAGCATTTGAAGGAGATAGCATCCCTTATTGAGACCGGTTCGTACTTTAAGGAGGTTCGTAGAATTGCTCGTGCTGTTCGCCTTACAATTGCGTTGAGGCGCAAATTGACAGCATCGGTGCTCTTATCTTTTATCGATTATGTTGCTTGTCCGGGTTCTGAACCTCACGCCAGATTGTCTGTCTATCTTCCCGAGGAAGATTCTCATGAGATGGAAGTAGAAACGGCAACATCTATTGTTCAACCCTCAGCTAAGCACTTATTGCCTGAGATAGAGATGTACTGTTACTTGCTCGTTCTACTTTTTCTGATTGATCAGAAGAAATATAAGGAGGCCAAAGCTTGTTCCTCAGCAGGCATTGCCCGGGTGAAGAACCTTAACAGAAGAACTGTTGATGTTATCGCATCCAGATTGTGCTTTTATTATTCATATATTCATGAACTCACTGGAGATCTTGCAGAAATTCGGGGTAACCTTCTTGCATTGCACCGGATTGCCACCCTTCGCCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTACTTCGTAACTACCTCCACTACAACCTGTATGATCAGGCGGAGAAGTTGAGGTCTAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGATATCTCTTCTATCTGGGGAAAATTCGGACAATTCAGTTGGAGTACACTGATGCAAAAGAGTCTCTCCTACAAGCTGCTCGAAAAGCTCCAGTAGCAGCGCTTGGTTTTCGTATTCAGTGTAATAAGTGGGCTGTAATGGTGCGTTTGCTGTTGGGAGAAATACCTGAGAGGACCATGTTCATGCAAAAAGGAATGGAGAAAGCTTTGAGGCCGTACTTTGACCTTACAAATGCTGTTCGAATTGGAGACCTGGAGCTATTTAGGAATGTTGCAGATAAGTTCGCTACTACTTTTAGTGCTGATGGAACTCATAATTTGATTGTTAGGTTGCGTCACAATGTCATCAGGACTGGTTTACGGAACATTAGCATTTCTTATTCTCGTATCTCGCTTGCTGATGTGGCACAAAAATTAAGGTTAAACTCTGCAAATCCCGTTTCAGATGCTGAGAGCATTGTAGCCAAGGCCATCAGAGATGGTGCAATTGATGCAACATTGGACCATGGTAATGGGTGTATGGTATCTAAGGAAACGGGAGATGTATACTCCACTACTGAGCCTCAATTGGCTTTTAATTCTCGTATTGCCTTCTGTCTCAACATGCATAATGAGGCCATCCGTGCGCTGCGTTTCCCGCCAAACACACACAATGAGAAGGAAAGCGCTGAGAAGCGAAGAGAAAGGCAGCAGCAGGAGCAAGAACTAGCTAAGCACATTCAAGAGGAGGAGGATGATGATTTCTGA 1464 0.4399 MTQDVEMKDHTTPSHSVSSAVPSTLQHLKEIASLIETGSYFKEVRRIARAVRLTIALRRKLTASVLLSFIDYVACPGSEPHARLSVYLPEEDSHEMEVETATSIVQPSAKHLLPEIEMYCYLLVLLFLIDQKKYKEAKACSSAGIARVKNLNRRTVDVIASRLCFYYSYIHELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAVMVRLLLGEIPERTMFMQKGMEKALRPYFDLTNAVRIGDLELFRNVADKFATTFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLNSANPVSDAESIVAKAIRDGAIDATLDHGNGCMVSKETGDVYSTTEPQLAFNSRIAFCLNMHNEAIRALRFPPNTHNEKESAEKRRERQQQEQELAKHIQEEEDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0720 487 Coils Coil 454 481 - -
Prci8g0720 487 MobiDBLite consensus disorder prediction 451 487 - -
Prci8g0720 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 4 478 - -
Prci8g0720 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Prci8g0720 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Prci8g0720 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Prci8g0720 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Prci8g0720 487 Pfam PCI domain 311 416 IPR000717 -
Prci8g0720 487 MobiDBLite consensus disorder prediction 453 480 - -
Prci8g0720 487 MobiDBLite consensus disorder prediction 1 21 - -
Prci8g0720 487 SMART PCI/PINT associated module 174 345 - -
Prci8g0720 487 Gene3D - 241 441 - -
Prci8g0720 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 423 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0720 Prci-Chr8 4612641 4618324 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0720 K03033 - qsa:O6P43_016308 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0073 2 629156 634923 Prci8g0720 8 4612641 4618324 CCT
Prci8g0720 8 4612641 4618324 Prci8g0720 8 4612641 4618324 ECH