Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0717 ATGATCGATTCCGTTCTCCTGGCACTCTTCTTGCCCTGCCTTGGCATGAGCGCCGTCTTCATGGTCTATATGTGCCTTCTCTGGTACGCCACCACCCACCGCCCGCAGGTCGTATTGCCGTCCAAGCCCGCGCCGGAGAAGGGCTTGTCGGCGTCAGAGCTGGAGAAGATGCCCAAGGTCACCGGGAAGGAACTGATGATGGGGAGTGATTGCGCGGTGTGTCTCGACGAGATCGAGAACGACCAACCGGCTCGGATGGTTCCGGGTTGCAACCACGGGTTCCATGTGGAATGCGCCGATGCCTGGCTTTCCAAGCACCCTCTCTGCCCGGTTTGTAGAGCCAAGCTGGACCCTCAGCTTCTCAATTCCTGCGAAAATCCCTGTTGA 387 0.5891 MIDSVLLALFLPCLGMSAVFMVYMCLLWYATTHRPQVVLPSKPAPEKGLSASELEKMPKVTGKELMMGSDCAVCLDEIENDQPARMVPGCNHGFHVECADAWLSKHPLCPVCRAKLDPQLLNSCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0717 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Prci8g0717 128 SMART ring_2 71 112 IPR001841 -
Prci8g0717 128 SUPERFAMILY RING/U-box 54 119 - -
Prci8g0717 128 Pfam Ring finger domain 70 113 IPR001841 -
Prci8g0717 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Prci8g0717 128 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 5 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0717 Prci-Chr8 4586461 4587503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0717 1 128 C3H Transcription Factor Family AT5G42200 52.941 2.08e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0717 K19037 - gmx:100817919 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci8g0717 8 4586461 4587503 Prci8g0717 8 4586461 4587503 ECH