Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0674 ATGAAAGGCGACAGATCGAAGGCGGATTCTAAGAAAGCTGATGCCAAGCTTGCTGTGAATAAGAAAGGCGCCGCCTCCAAGGCAGGCAGGAAACCAAGTAAGGGGAAGGCTGCGAAAGACCCTAACAAGCCAAAGAGACCGGCCAGCGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTAACAACAAAGCAGTGTCTGCCGTTGGCAAAGCTGCTGGGGCAAAATGGAAGTCCATGTCTGATGCTGAGAAGGCACCCTATGTTGCTAAAGCAGAGAAACGAAAGGCTGATTACGAGAAGAATATGAAAGCCTATAACAAGCGACAGGCGGAAGGTCCAAATGCTGCAGAAGAAGAAGAATCTGAGAAGTCAATGTCTGAGGTGAATGATGCGGAGGGAGGAGATGAGGAGGGCAGCGATGAGGAGGAAGATGACGAGTAG 462 0.4935 MKGDRSKADSKKADAKLAVNKKGAASKAGRKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPNNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKADYEKNMKAYNKRQAEGPNAAEEEESEKSMSEVNDAEGGDEEGSDEEEDDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0674 153 Gene3D High mobility group box domain 26 139 IPR036910 -
Prci8g0674 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Prci8g0674 153 SUPERFAMILY HMG-box 32 120 IPR036910 -
Prci8g0674 153 Pfam HMG (high mobility group) box 44 113 IPR009071 -
Prci8g0674 153 CDD HMG-box_AtHMGB1-like 45 105 - -
Prci8g0674 153 SMART hmgende2 43 114 IPR009071 -
Prci8g0674 153 Coils Coil 95 115 - -
Prci8g0674 153 MobiDBLite consensus disorder prediction 138 153 - -
Prci8g0674 153 MobiDBLite consensus disorder prediction 78 153 - -
Prci8g0674 153 MobiDBLite consensus disorder prediction 1 48 - -
Prci8g0674 153 MobiDBLite consensus disorder prediction 1 18 - -
Prci8g0674 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 44 113 IPR009071 -
Prci8g0674 153 MobiDBLite consensus disorder prediction 93 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0674 Prci-Chr8 4375119 4376972 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci8g0674 HMG_box 8.7e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0674 K25507 - qsa:O6P43_016371 204.527