Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0653 ATGGCATACCACCAGATCCAGGGTCACACGCCCACGCCTGGATCCAATTCAAGTTCTGGATTTCAACCAATAAGCTCCCCTTTTGGTGATACGACTTATACCAAAGTATTTGTTGGAGGATTGGCGTGGGAGACCCAGAGCGAAACCATGCGCCGATACTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTTGTAATTACTGATAGGAATACAGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGCGCTGATCCAACTCCTATCATTGATGGAAGGAAGGCCAATTGTAACCTGGCTTCACTTGGCCGACCATGGCCTCCTGTGCCATATGGACGGATAAGGCCAGCTGCTGCTTACATGGGAAATTTGCAACCAGCCCGAAATCCGTATGTTGGAAGTTTTGGCTATCAGCAGCCACCTTCTTACAACTATCAACAAGGATTGGTTTATCCTCATTATGGGTATCCAACATATGGACCTGAATATGTATACCCACAGGGTTTGTACAACCCATATACGGGCCAGCAATACGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATGCTATTTATCCTTATGGGCAGTTAGGTCAAGCTATTCCCAGTAGTCATGGTTATGCAGGAATGCAGGGCTATGCTGTAACTGGTCATCACATTGTGCCTTATGGTGGAACCAATGTTAATGCCCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGATCAATGTGATTGGTATACATATTGGTTTTTCCAGGAATTGCTGCACCAGTTCCCGGACAACCACAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGTACTGGTCCTGACCAAGCAGCTGGGTGAGGGGGCGATTAAGGTATCCTTAGTTTGCAGCAGGACTAAGAGCAGTGGATCTGCTACGTGTGTGGCGGGCTTCCAATCTAGCCTTGCAAGTTATATATATTGCATTCTAGAGGTTATATTTAGTCATGCTCACCATCTAGTTGGGTCGGAGTTTCTCCGGGCGCAGAAGGAAACTGGAAGATGCTGGCTGCGTTTCCATTTGGACATTTATATAGTGTATTTATACAATTATACCCCATGCTACAAGCGCTCAGGAAGAGTGGCAGTAGTATTGGATCAATGGGTGCTGGAAAGGGTTTCCAGCGGCCATGTAGAAATGTGA 1218 0.4663 MAYHQIQGHTPTPGSNSSSGFQPISSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRKANCNLASLGRPWPPVPYGRIRPAAAYMGNLQPARNPYVGSFGYQQPPSYNYQQGLVYPHYGYPTYGPEYVYPQGLYNPYTGQQYVQIYGVPGAVNNAIYPYGQLGQAIPSSHGYAGMQGYAVTGHHIVPYGGTNVNALTTSPMPTIQVPYPSDQCDWYTYWFFQELLHQFPDNHNLLSLRLLSLCKVLVLTKQLGEGAIKVSLVCSRTKSSGSATCVAGFQSSLASYIYCILEVIFSHAHHLVGSEFLRAQKETGRCWLRFHLDIYIVYLYNYTPCYKRSGRVAVVLDQWVLERVSSGHVEM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0653 405 SMART rrm1_1 35 107 IPR000504 GO:0003723
Prci8g0653 405 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Prci8g0653 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Prci8g0653 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
Prci8g0653 405 SUPERFAMILY RNA-binding domain, RBD 11 121 IPR035979 GO:0003676
Prci8g0653 405 PANTHER BOULE-RELATED 14 249 - -
Prci8g0653 405 Gene3D - 3 116 IPR012677 -
Prci8g0653 405 MobiDBLite consensus disorder prediction 8 24 - -
Prci8g0653 405 CDD RRM_RBM24_RBM38_like 34 109 - -
Prci8g0653 405 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0653 Prci-Chr8 4288949 4293584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0653 24 216 C2H2 Transcription Factor Family AT2G19380 28.431 2.21e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0653 - - pcin:129318420 845.884