Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0623 ATGGTTTTGTCTTGGTCCAGAAGAAGAGTTTTCCGCCGTGCCCGCAAAGGAAAAGACGTTCCCGGTCCAGCCGGCGCCAGTGACTTGGACGTCGATGTCGAGGTGCTTGTTCCGACGCACTTCCGATGCCCGATTACTCTCGACTTGATGAAAGATCCGGTCACTTTATCCACCGGGATCACCTACGACAGAGACAGCATCGAGAAGTGGGTCGAATCTGGAAACCAGACCTGCCCCGTCACAAACCAGTCGTTGATTAGCTTCGACGTGATCCCCAACCACGCCATCCGTAGGATGATCCAAGAATGGTGCGTCGAGCATCGTTCCTACGGCATCGAGAGAATCCCCACCCCGAGAATTCCAGTCACGCAGTACGAGGTTTCCGATATCTGTGGGAAAATAATGTCGGCGACGCAACGTGGGGACGACAACAAGTGCCAACAGTTGGTGGCTAAGATCAAGATCTGGGGCAGAGAGAGCGAGAGGAACAAGAAGTGTATAGTTGAAAACGGCGCTGCTGTTGCACTGGCCAACGCCTTCAGTTCTTTCTCAAGCGCTTCGATTGAGAAAAACGTTGGCCTTTTAGACGAGATTTTGGGGCTTTTAACATGGATTCTTCCAAAGCGACAGGATGGTTATTCTCAAATTCAAGCTCAATCACTGTTGAGCTCAGAAGCGTCTTTAAGTTGCATGGTTTGGTTCCTCAACAGCAAAGATCTCTCATCAAGGCAAAACGCAGCTTTGGTGCTGAAGCAAGTGCCTGTAGAACCATTAGCAAAGACTGAAGGTATGATTGAAGCTTTAGTTAAGATGATCAAAGAACCCGTAGGCCCTTCTGCAACAAAAGCATGCCTGAAAGCAATTTTCCAGATGGTTTCCTCATCAAATGAGAAAGAGAGGATCATCAAAAGATGTGTGGAACTAAGTCTGGTCATGTTGTTGCTGGAAGCCCTAGTGGATGGAGATAGAGGGACAAGTGAGAAGGCTTTGGGTACGTTGGATTGCATATGTGATTACGGTGAAGGGAAGGAAGTGGCCAAGGCTAATATGTTAACTTTGCCTATCGTGGTGAAGAAGATACTGAGAGTATCTGGTTTGGCTTCTGATTTTGGAGTGTCAATTCTTTGGAAGCTTTGTGATAAGATGGAGGAAACTGTGGTGAAGGAGGCACTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGGTGAGAACACGAAGGGGAAGGCCACTGATTTGTTGAAGTTGCTGAATGCTTATAAGAACACAGTGGAGTGTGTTGATTCGTCTTTGGATTTGAAGTACCTTAAGAAGCCGTTTTGA 1338 0.4768 MVLSWSRRRVFRRARKGKDVPGPAGASDLDVDVEVLVPTHFRCPITLDLMKDPVTLSTGITYDRDSIEKWVESGNQTCPVTNQSLISFDVIPNHAIRRMIQEWCVEHRSYGIERIPTPRIPVTQYEVSDICGKIMSATQRGDDNKCQQLVAKIKIWGRESERNKKCIVENGAAVALANAFSSFSSASIEKNVGLLDEILGLLTWILPKRQDGYSQIQAQSLLSSEASLSCMVWFLNSKDLSSRQNAALVLKQVPVEPLAKTEGMIEALVKMIKEPVGPSATKACLKAIFQMVSSSNEKERIIKRCVELSLVMLLLEALVDGDRGTSEKALGTLDCICDYGEGKEVAKANMLTLPIVVKKILRVSGLASDFGVSILWKLCDKMEETVVKEALQVGAFQKVLVLLQVGCGENTKGKATDLLKLLNAYKNTVECVDSSLDLKYLKKPF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0623 445 CDD RING-Ubox_PUB 38 90 IPR045210 -
Prci8g0623 445 Gene3D - 131 427 IPR011989 -
Prci8g0623 445 Pfam U-box domain 37 108 IPR003613 GO:0004842|GO:0016567
Prci8g0623 445 SUPERFAMILY ARM repeat 196 428 IPR016024 -
Prci8g0623 445 PANTHER WDSAM1 PROTEIN 34 426 IPR045185 GO:0061630
Prci8g0623 445 SUPERFAMILY RING/U-box 37 113 - -
Prci8g0623 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 114 IPR013083 -
Prci8g0623 445 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842|GO:0016567
Prci8g0623 445 FunFam RING-type E3 ubiquitin transferase 31 113 - -
Prci8g0623 445 SMART Ubox_2 40 103 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0623 Prci-Chr8 4096045 4097710 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0623 34 445 U-box Gene Family AT5G37490 47.733 4.87e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0623 - - gmx:100795913 551.592