Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0622 ATGACCAGAAAGAAGGTGAAGCTCGCGTTCATAGCGAACGACTCTGCGAGGAAAGCGACATACAAGAAGAGAAAGAAGGGTCTGATCAAGAAGATCGACGAACTAACCACTCTCTGCGGAATCGAGGCTTGTGCCATTGTGTACAGTCCGTACGATTCTCAGCCGGAGGTTTGGCCTTCTCCGTTCGGAGTCCAGCGAGTTCTGTCGAAGTTCAGGAGGATGCCGGAGCTGGAGCAGAGCAAGAAGATGGTGAATCAGGAAGGATTTCTGAAGCAAAGGATCATGAAAGCGAAGGAGCAGCTGAAGAAGCATAGGAAGGACAATAGGGAGAAGGAGATGACGCAGATCATGTACCAGTATCTCAGTGCAGGAAAGGTTCTTCATAACATGACGATGATCGATCTCAACGATCTGGCTTGGCTCGTGGAGCAGAATCTGAAGGAGGTTAATCGGAGGATGGAGACGCTGCATAAGACGGCTCAGAGTCAGAGGGCGGTGGACGTGGCGGCCATCGCGGCGGCCGATGTGGCGGCGAGGGGCAGAGATAAGGCGAAGGTGGAGCAGGTGGATGCGCTGGAGGTGGCGGCGAGGGGAAGCGATGCCAAAGCAGCAGTGGTATATGGACATGATGAACGGTGGTGCTGA 645 0.538 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRIMKAKEQLKKHRKDNREKEMTQIMYQYLSAGKVLHNMTMIDLNDLAWLVEQNLKEVNRRMETLHKTAQSQRAVDVAAIAAADVAARGRDKAKVEQVDALEVAARGSDAKAAVVYGHDERWC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0622 214 PANTHER MADS BOX PROTEIN 3 153 - -
Prci8g0622 214 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Prci8g0622 214 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Prci8g0622 214 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Prci8g0622 214 Coils Coil 94 114 - -
Prci8g0622 214 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Prci8g0622 214 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Prci8g0622 214 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci8g0622 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Prci8g0622 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci8g0622 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci8g0622 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0622 Prci-Chr8 4087540 4088583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0622 1 175 Type I MADS-box Gene Family AT5G48670 60.000 1.16e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci8g0622 SRF-TF 5.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0622 - - pcin:129317170 401.749