Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0621 ATGGTTTTGTCTTGGTCCAGAAGAAGAGTTTTCCGCCGTGCGCGCAAAGGAAAAGACGTTCCCGGCCCAGCCGGCGCCAGTGACTTGGACGTCGATGTCGAGGTGGTTGTTCCGACGCACTTCCGATGCCCGATTACTCTCGACTTGATGAAAGATCCGGTCACTTTATCCACCGGGATCACCTACGACAGAGACAGCATCGAGAAGTGGGTCGAATCTGGAAACCAGACCTGCCCCGTCACAAACCAGTCGTTGATTAGCTTCGACGTGATCCCCAACCACGCCATCCGTAGGATGATCCAAGAATGGTGCGTCGAGCATCGTTCCTACGGCGTCGAGAGAATCCCCACCCCGAGAATTCCAGTCACGCAGTACGAGGTTTCCGATATCTGTGGGAAAATAATGTCGGCGACGCAACGTGGGGACGACAACAAGTGCCAACAGTTGGTGGCTAAGATCAAGATCTGGGGCAGAGAGAGCGAGAGGAACAAGAAGTGTATAGTTGAAAACGGCGCTGCTGTTGCACTGGCCAACGCCTTCAGTTCTTTCTCAAGCGCTTCGATTGAGAAAAACGTTGGCCTTTTAGACGAGATTTTGGGGCTTTTAACATGGATTCTTCCAAAGCGACAGGATGGTTATTCTCAAATTCAAGCTCAATCACTGTTGAGCTCAGAAGCGTCTTTAAGTTGCATGGTTTGGTTCCTCAACAGCAAAGATCTCTCATCAAGGCAAAACGCAGCTTTGGTGCTGAAGCAAGTGCCTGTAGAACCATTAGCAAAGACTGAAGGTATGATTGAAGCTTTAGTTAAGATGATCAAAGAACCCGTAGGCCCTTCTGCAACAAAAGCATGCCTGAAAGCAATTTTCCAGATGGTTTCCTCATCAAATGAGAAAGAGAGGATCATCAAAAGATGTGTGGAACTAAGTCTGGTCATGTTGTTGCTGGAAGCCCTAGTGGATGGAGATAGAGGGACAAGTGAGAAGGCTTTGGGTACGTTGGATTGCATATGTGATTACGGTGAAGGGAAGGAAGTGGCCAAGGCTAATATGTTAACTTTGCCTATCGTGGTGAAGAAGATACTGAGAGTATCTGGTTTGGCTTCTGATTTTGGAGTGTCAATTCTTTGGAAGCTTTGTGATAAGATGGAGGAAACTGTGGTGAAGGAGGCACTTCAAGTGGGAGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGGTGAGAACACGAAGGGGAAGGCCACTGATTTGTTGAAGTTGCTGAATGCTTATAAGAACACAGTGGAGTGTGTTGATTCGTCTTTGGATTTGAAGTACCTTAAGAAGCCGTTTTGA 1338 0.4783 MVLSWSRRRVFRRARKGKDVPGPAGASDLDVDVEVVVPTHFRCPITLDLMKDPVTLSTGITYDRDSIEKWVESGNQTCPVTNQSLISFDVIPNHAIRRMIQEWCVEHRSYGVERIPTPRIPVTQYEVSDICGKIMSATQRGDDNKCQQLVAKIKIWGRESERNKKCIVENGAAVALANAFSSFSSASIEKNVGLLDEILGLLTWILPKRQDGYSQIQAQSLLSSEASLSCMVWFLNSKDLSSRQNAALVLKQVPVEPLAKTEGMIEALVKMIKEPVGPSATKACLKAIFQMVSSSNEKERIIKRCVELSLVMLLLEALVDGDRGTSEKALGTLDCICDYGEGKEVAKANMLTLPIVVKKILRVSGLASDFGVSILWKLCDKMEETVVKEALQVGAFQKVLVLLQVGCGENTKGKATDLLKLLNAYKNTVECVDSSLDLKYLKKPF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0621 445 CDD RING-Ubox_PUB 38 90 IPR045210 -
Prci8g0621 445 Gene3D - 131 427 IPR011989 -
Prci8g0621 445 PANTHER WDSAM1 PROTEIN 34 426 IPR045185 GO:0061630
Prci8g0621 445 Pfam U-box domain 37 108 IPR003613 GO:0004842|GO:0016567
Prci8g0621 445 SUPERFAMILY ARM repeat 196 428 IPR016024 -
Prci8g0621 445 SUPERFAMILY RING/U-box 35 113 - -
Prci8g0621 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 114 IPR013083 -
Prci8g0621 445 ProSiteProfiles U-box domain profile. 36 110 IPR003613 GO:0004842|GO:0016567
Prci8g0621 445 SMART Ubox_2 40 103 IPR003613 GO:0004842|GO:0016567
Prci8g0621 445 FunFam RING-type E3 ubiquitin transferase 31 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0621 Prci-Chr8 4084306 4085817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci8g0621 34 445 U-box Gene Family AT5G37490 47.494 4.52e-121 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0621 - - gmx:100795913 551.592