Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci8g0594 ATGGCTATTCGAGATCATAATGAAGTTTCTAAATACAATGGTCTTCCACTAGAAAATGGAGTATCTCTGAGTTATGGACTACGTTCTGCTTCACAGGTTCATCTAAATGATCAGTTTTCTTGTGGGAATGACCATGCTCCAAAGGTAAGGAAACCATACACTATCACGAAACAGAGGGAGCGATGGACAGATGAAGAGCATAAGAAATTTCTTGAAGCCCTGAAACTGTATGGCAGGGCATGGCGAAACATTGAAGAACATATTGGCACAAAGACCGCAGTTCAGATTCGCAGCCATGCTCAGAAGTATTTCACAAAGCAGGTTCTTCGTGACTCTACTGGGAGCAGCATAAGCTCCGTGGAGTCCATTGAAATCCCACCTCCACGACCAAAGCGAAAGCCTTCGCATCCTTACCCTCGTAAGCTGGCGGAGATCCCTGATAAAGCAGTTTCCAACACAGGCCAAGCAATGATGAGGTCTAATTCTCTCAAGTCATCAGAATCTGATCAGGAAAACCACTCTCCAAAATCAGTGTTATCTACGGTTGGTTTGGACGCTCTGGGTTACTCTGATTCATATAAACCAGATGGAAGTTCGTGCGAGGAAGATCCTTCCACGCCAAATGCCGATTCATCGCTTGATCTGCAAACTCTTGGGAAATTTGAGCTTTTCCACAAAGAAAGTATGTCTACCAAAGACGACTCAACGGAAGAACCTTGTGGTCGGATCGTTAAGCTTTTTGGGACTAATCTTCTGGTAACAGATAGTTGTCCAACAATGAAAAATTCGGATGTAGCAGAAGCTCCTGCTGGTTTTGCTCCTTGGAGGACTGTTTCCCTCAAGAGGAAGAATCATCATCTACAATCTAACAATAAGGAAGTTGAAGATGATAAAGTTGAAAAGGAAGCATCTTGGTGTGGTTCAAACATTACTAACTCAATAAATGATGGGGACAATGATGAAAACGCAGACGTTGAAGCCAGAAGTCACATGCATTGCCACAGGAAGGGAGAAAAATTGGACTTTTTTGGCCGCATGACAACACCCAGAGACGCGTCAGACGTATCTGAAACATGGGGGAGGCCTAAAGGGTTTGTGCCATATAAAATATTCATAGCAGAGAGAGAAAATCAGCCCTTGCCTGTAACAGCAGAGGAGAGGGATGGCCAACGCATTCGCCTTTCATTATAG 1191 0.44 MAIRDHNEVSKYNGLPLENGVSLSYGLRSASQVHLNDQFSCGNDHAPKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRNIEEHIGTKTAVQIRSHAQKYFTKQVLRDSTGSSISSVESIEIPPPRPKRKPSHPYPRKLAEIPDKAVSNTGQAMMRSNSLKSSESDQENHSPKSVLSTVGLDALGYSDSYKPDGSSCEEDPSTPNADSSLDLQTLGKFELFHKESMSTKDDSTEEPCGRIVKLFGTNLLVTDSCPTMKNSDVAEAPAGFAPWRTVSLKRKNHHLQSNNKEVEDDKVEKEASWCGSNITNSINDGDNDENADVEARSHMHCHRKGEKLDFFGRMTTPRDASDVSETWGRPKGFVPYKIFIAERENQPLPVTAEERDGQRIRLSL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci8g0594 396 CDD SANT 61 104 IPR001005 -
Prci8g0594 396 FunFam protein REVEILLE 6 isoform X1 61 108 - -
Prci8g0594 396 MobiDBLite consensus disorder prediction 191 211 - -
Prci8g0594 396 MobiDBLite consensus disorder prediction 115 177 - -
Prci8g0594 396 MobiDBLite consensus disorder prediction 126 143 - -
Prci8g0594 396 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 107 IPR006447 GO:0003677
Prci8g0594 396 SUPERFAMILY Homeodomain-like 53 106 IPR009057 -
Prci8g0594 396 MobiDBLite consensus disorder prediction 380 396 - -
Prci8g0594 396 PANTHER SWI/SNF COMPLEX-RELATED 42 297 - -
Prci8g0594 396 Gene3D - 61 108 - -
Prci8g0594 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Prci8g0594 396 MobiDBLite consensus disorder prediction 153 177 - -
Prci8g0594 396 MobiDBLite consensus disorder prediction 376 396 - -
Prci8g0594 396 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Prci8g0594 396 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Prci8g0594 396 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Prci8g0594 396 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci8g0594 Prci-Chr8 3959082 3962106 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci8g0594 Myb_DNA-binding 4.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci8g0594 - - pcin:129299230 760.37